PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla012226

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

YABBY

Protein Properties

Length: 169aa MW: 18820.6 Da PI: 8.1249

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla012226	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	131.7	9.3e-41	68	143	96	170
YABBY 96 vsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++s+k++ ++ + v+rPPekrqrvPsayn+fikeeiqrikasnP+ishreafs+aaknWahfP+ihfgl Cla012226 68 NNSNKMEIRAPTTIAAEERvVNRPPEKRQRVPSAYNQFIKEEIQRIKASNPEISHREAFSTAAKNWAHFPRIHFGL 143 444555555555554444449*****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.7E-39	64	143	IPR006780	YABBY protein
SuperFamily	SSF47095	5.5E-8	84	136	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.3E-4	91	137	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MAASCIDIAP EQLCYIPCNF CNIVLASDVG TAQICGPSIW LLPFSLFLGK IFSGGDFQGD 60 FGSSSKCNNS NKMEIRAPTT IAAEERVVNR PPEKRQRVPS AYNQFIKEEI QRIKASNPEI 120 SHREAFSTAA KNWAHFPRIH FGLMLETNNQ VKLDDGSERL MTRAALLNK

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004150030.1	8e-90	PREDICTED: axial regulator YABBY 5-like
Swissprot	Q8GW46	3e-55	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A1S4DUX7	1e-73	A0A1S4DUX7_CUCME; axial regulator YABBY 5-like
STRING	XP_004150030.1	3e-89	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	4e-53	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]