PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla012580
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family AP2
Protein Properties Length: 537aa    MW: 59730.4 Da    PI: 6.4727
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla012580genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.65.4e-12208264155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  Cla012580 208 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 264
                78*******************433.44555535555.779999**************98 PP
2AP246.68.7e-15309358355
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Cla012580 309 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 358
                9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.5E-9208264IPR001471AP2/ERF domain
CDDcd000181.79E-18208274No hitNo description
SuperFamilySSF541718.5E-15208274IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-12209273IPR001471AP2/ERF domain
SMARTSM003807.5E-23209278IPR001471AP2/ERF domain
PROSITE profilePS5103217.332209272IPR001471AP2/ERF domain
PRINTSPR003671.2E-6210221IPR001471AP2/ERF domain
CDDcd000181.54E-24307368No hitNo description
SuperFamilySSF541719.15E-18307368IPR016177DNA-binding domain
PROSITE profilePS5103219.137308366IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-18308366IPR001471AP2/ERF domain
SMARTSM003802.1E-34308372IPR001471AP2/ERF domain
PfamPF008471.7E-9309358IPR001471AP2/ERF domain
PRINTSPR003671.2E-6348368IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MSNWLGFSLT PHLRIHDAAA AADEQPDHAA FPHLMPLRSD GSLCIAAAHD WRSYENEMGA  60
TNEEESPKLE DFLGNCYSNS PPNDQTHSSN AAAFIQPNNN NNSSNNNNDD KYHYQADHQT  120
HQSLIPNNNN GIYKSWLGPT PQNECRFQSL SLGMSPNSQN DVASLPSPPS PPPHMAGDSR  180
KRPMPVAKPL IKEPVPRKSI DTFGQRTSQY RGVTRHRWTG RYEAHLWDNS CRKEGQTRKG  240
RQGGYDKEEK AARAYDLAAL KYWGPTTHIN FPLSTYENEL EEMKNMTRQE FVANLRRKSS  300
GFSRGASMYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGTS  360
AVTNFDISRY DVKRICSSST LIASDLAKRS PLKDGTPSTN EDYSACASPS SSSQPLLAIT  420
GDGGAESHHE LADVVWCDNT ATDDNNQHHE NVAKMNNDLS LMGSSNRTMD PSSKCSPVQN  480
NEEFGIGVGG GGEYSQGYFS MQEEKYEDGN EEGDQNSRQV SVTLAHHHVP MFALWNQ
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022998687.10.0AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-135AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A1S3CKZ70.0A0A1S3CKZ7_CUCME; AP2-like ethylene-responsive transcription factor AIL1
STRINGXP_008463998.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102743137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-130AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]