PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla012608
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 399aa    MW: 43887.5 Da    PI: 8.6874
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla012608genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.13.6e-067193123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C++Cgk F r  nL+ H r H
  Cla012608 71 FVCEICGKGFQRDQNLQLHRRGH 93
               89*******************88 PP
2zf-C2H213.10.00028148170123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC +C+k++  +s+ k H +t+
  Cla012608 148 WKCDKCSKRYAVQSDWKAHSKTC 170
                58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.51E-77093No hitNo description
PROSITE profilePS5015711.6147193IPR007087Zinc finger, C2H2
SMARTSM003550.0127193IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.1E-57193IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
SMARTSM00355250113143IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-4136169IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.51E-7143168No hitNo description
SMARTSM00355140148168IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MEENLSNLTS ASGEASACSG NHSDQIPTNY SGQYFSTPPP PKKKRNLPGN PDPDAEVIAL  60
SPKTLMATNR FVCEICGKGF QRDQNLQLHR RGHNLPWKLK QRANKEVIRK KVYVCPETSC  120
VHHDPSRALG DLTGIKKHFC RKHGEKKWKC DKCSKRYAVQ SDWKAHSKTC GTREYRCDCG  180
TIFSSASSLS SPHMSATALL QKAAQMGATM SHNTEPPHTI TPQQQHYSDS SATNNNNNNN  240
NNNNTNCNFG LNLSSSSSSS RDITHQQQNQ ILMMGSSTSC SSTTEAAGLS HVLPFYRNKS  300
SSSHDHLLLH HHANFDQGGT CFELDEFGGV FKKSDHNSSS DQAGLSTRDF LGLRAISHTE  360
FLTNIAAAGY STNCINNNNN NVAAQTPQAQ IQNQSTWKG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-23144213372Zinc finger protein JACKDAW
5b3h_F3e-23144213372Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197110KLKQRANKEVIRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6826790.0LN682679.1 Cucumis melo genomic scaffold, unanchored_scaffold00852.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011652350.10.0PREDICTED: protein indeterminate-domain 11-like isoform X2
SwissprotQ9LRW71e-102IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLA0A1S3CQM61e-134A0A1S3CQM6_CUCME; protein indeterminate-domain 7-like
STRINGXP_008465570.11e-135(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.11e-102indeterminate(ID)-domain 11
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]