PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla012667
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 148aa    MW: 16262.2 Da    PI: 5.2843
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla012667genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.30.0006631691255
               HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
               R +++ +++  L +l+ +      +K + a++L +A+ Y++ Lq
  Cla012667 31 RKEKVGDRITALHQLVSPF-----GKTDTASVLSEAIGYVRFLQ 69
               6677889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.7281968IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-102980IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-82985IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.86E-62973No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MIKCASTATT GGVWKKARVQ PASGQPPVKV RKEKVGDRIT ALHQLVSPFG KTDTASVLSE  60
AIGYVRFLQS QIERTFNDGR NLREVIEGEN NGSCVFPEDP GQEEEEEEAA KEYLRGRGLC  120
LVPVSCTQHV QSDINGADYW AQAYNGTF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818275e-46LN681827.1 Cucumis melo genomic scaffold, anchoredscaffold00018.
GenBankLN7132585e-46LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011651506.16e-74PREDICTED: transcription factor bHLH68-like isoform X3
SwissprotQ8S3D12e-43BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A0A0L8272e-72A0A0A0L827_CUCSA; Uncharacterized protein
STRINGXP_004150346.13e-73(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12233379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.14e-43bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]