PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla012754
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 266aa    MW: 28627.9 Da    PI: 8.3597
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla012754genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.0002185107123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++C + F ++  L  H++ H
  Cla012754  85 FSCNYCQRKFYSSQALGGHQNAH 107
                89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.19E-681112No hitNo description
PROSITE profilePS5015711.42785112IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDFPIPEPSP SETSTIISAS ESSPPCPKGD RITDQINPNS QLGLDLSLSN KDSDHGSNPE  60
LNLIDCFDVN LTTEPTDTET EPRVFSCNYC QRKFYSSQAL GGHQNAHKRE RTLAKRTQRV  120
GSASNFGLAH RYSSLASLPL HGSFSRSLGI QAHSMVHKPS SLHVSAIGSS GIYGHSGWSR  180
QPLDQHPAIG RLMQGNSHVG SLRGISSNTG AARFQGVKKF SPAADTEAPP PLGGFWWDGG  240
GGGGFSHLKM KPKQDELLKL DLSLKL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818740.0LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008454489.11e-159PREDICTED: zinc finger protein 3-like
TrEMBLA0A1S3BZI21e-158A0A1S3BZI2_CUCME; zinc finger protein 3-like
STRINGXP_008454489.11e-159(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.14e-46C2H2 family protein