PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla012770
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 157aa    MW: 17016 Da    PI: 8.2188
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla012770genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2483.1e-15857255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                y+GVr +  +g+W++eI+dp+    r k+ ++g+f tae A +a++a + +++g
  Cla012770  8 SYRGVRKRQ-WGKWASEIHDPT----RkKQLWIGSFETAETAVRAYDAVAFYFRG 57
               69****888.**********84....35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.96E-27767No hitNo description
PfamPF008471.2E-8857IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-28866IPR001471AP2/ERF domain
SMARTSM003802.5E-29871IPR001471AP2/ERF domain
PROSITE profilePS5103221.891865IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-20866IPR016177DNA-binding domain
PRINTSPR003672.3E-12920IPR001471AP2/ERF domain
PRINTSPR003672.3E-124767IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MADRVSKSYR GVRKRQWGKW ASEIHDPTRK KQLWIGSFET AETAVRAYDA VAFYFRGSKA  60
RLNFPEAVHT LPSFPDNPSV DEIREVARQS VGATAISESG GGGGGSISGV TELGLVDEEI  120
ISVENNPRVS IKSNPSGNGL CIPQSSRCLN NITFGES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-18770468ATERF1
3gcc_A2e-18770468ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9C9I22e-26ERF21_ARATH; Ethylene-responsive transcription factor ERF021
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.18e-29ERF family protein