PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla012800

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

Nin-like

Protein Properties

Length: 963aa MW: 106031 Da PI: 5.1392

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla012800	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.5	3.1e-29	588	639	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI RWP+Rki+++ Cla012800 588 AEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGILRWPSRKINKV 639 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.824	578	659	IPR003035	RWP-RK domain
Pfam	PF02042	9.1E-26	591	639	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.22E-22	856	947	No hit	No description
Gene3D	G3DSA:3.10.20.240	7.3E-24	860	942	No hit	No description
PROSITE profile	PS51745	21.017	863	945	IPR000270	PB1 domain
SMART	SM00666	8.7E-22	863	945	IPR000270	PB1 domain
CDD	cd06407	4.42E-30	864	944	No hit	No description
Pfam	PF00564	5.2E-17	866	944	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 963 aa Download sequence Send to blast
MENPFTSKEE GMGSWGPSRT QAETLTSTDV GMRILSPEDV LHSFSELMSF DSYAGWGNNC 60 ATIDQIFSSC GFSSIPPMST CPSMVGLTFP EGASHEAFPL NELDGASISV ANSFSCGDKV 120 MFQQPDTEFG VSDVSDNANE AGSKSNDVLL DNCSISRPFS WSLDERMLRA LSLFKESSPG 180 GILAQVWVPV RHGNQFFLST SDQPYLLDQM LTGYREVSRS FTFSAEGKLG SLLGLPGRVF 240 TSKIPEWTSN VRYYSENEYL RMEHAIGHEV YGSIALPVFN NELEKSCCAV LEVVTTKEKP 300 DFDAEIDIVS RALEIVSLRT VAPPRLYPQC LKQNQRSALA EIMDVLRAVC HAHSLPLALT 360 WIPCCYTLEA VDEAARVRVK ENNLSPKEKS VLCIEETACY VNDKATQGFV HACMEHHLEE 420 GQGIAGKALQ SNHPFFYPDV KAYDINKYPL VHHARKFGLN AAVAIRLRST YTGDDDYILE 480 FFLPVSMKGS SEQQLLLNNL SGTMQRMCRS LRTVSKEELM GVRDPDAGFQ GGLIGKSAAT 540 SRRNSQSTVT DSETRVSNSI NDGTEAECPK KQMTNGSRRQ GEKKRSTAEK NVSLSVLQQY 600 FSGSLKDAAK SIGVCPTTLK RICRQHGILR WPSRKINKVN RSLRKIQTVL DSVKGVEGGL 660 KFDPTTGGLM AAGSLIPELN GQNSLLFSDN NPSTRNLEPF LQDVNSVPPV PFNGQNSAMK 720 LEMEDSFITI SQRISSRSIL IPEEEPNVCQ LDCSEGSKST GVDAASCQLA EMDMMGWDVP 780 RNAECRRSGD ADCQFMAKSS CSFAAADEGI EGINEHYQPT TSSTADSSNG SGLLIHGSSS 840 SCQSVEERKH LPEKISSVDS DSKIIVKASY REDTVRFKFD PSLGYLQLYE EVGKRFKLNQ 900 GTFQLKYLDD EKEWVMLVSN SDLQECLEVM DEIGTRNVKF LVRDIVCAVG SSSSSSCFLS 960 RGS

Sequence ? help Back to Top

Protein Sequence Length: 963 aa Download sequence Send to blast

MENPFTSKEE GMGSWGPSRT QAETLTSTDV GMRILSPEDV LHSFSELMSF DSYAGWGNNC  60
ATIDQIFSSC GFSSIPPMST CPSMVGLTFP EGASHEAFPL NELDGASISV ANSFSCGDKV  120
MFQQPDTEFG VSDVSDNANE AGSKSNDVLL DNCSISRPFS WSLDERMLRA LSLFKESSPG  180
GILAQVWVPV RHGNQFFLST SDQPYLLDQM LTGYREVSRS FTFSAEGKLG SLLGLPGRVF  240
TSKIPEWTSN VRYYSENEYL RMEHAIGHEV YGSIALPVFN NELEKSCCAV LEVVTTKEKP  300
DFDAEIDIVS RALEIVSLRT VAPPRLYPQC LKQNQRSALA EIMDVLRAVC HAHSLPLALT  360
WIPCCYTLEA VDEAARVRVK ENNLSPKEKS VLCIEETACY VNDKATQGFV HACMEHHLEE  420
GQGIAGKALQ SNHPFFYPDV KAYDINKYPL VHHARKFGLN AAVAIRLRST YTGDDDYILE  480
FFLPVSMKGS SEQQLLLNNL SGTMQRMCRS LRTVSKEELM GVRDPDAGFQ GGLIGKSAAT  540
SRRNSQSTVT DSETRVSNSI NDGTEAECPK KQMTNGSRRQ GEKKRSTAEK NVSLSVLQQY  600
FSGSLKDAAK SIGVCPTTLK RICRQHGILR WPSRKINKVN RSLRKIQTVL DSVKGVEGGL  660
KFDPTTGGLM AAGSLIPELN GQNSLLFSDN NPSTRNLEPF LQDVNSVPPV PFNGQNSAMK  720
LEMEDSFITI SQRISSRSIL IPEEEPNVCQ LDCSEGSKST GVDAASCQLA EMDMMGWDVP  780
RNAECRRSGD ADCQFMAKSS CSFAAADEGI EGINEHYQPT TSSTADSSNG SGLLIHGSSS  840
SCQSVEERKH LPEKISSVDS DSKIIVKASY REDTVRFKFD PSLGYLQLYE EVGKRFKLNQ  900
GTFQLKYLDD EKEWVMLVSN SDLQECLEVM DEIGTRNVKF LVRDIVCAVG SSSSSSCFLS  960
RGS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681874	0.0	LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBank	LN713261	0.0	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008454098.1	0.0	PREDICTED: protein NLP9
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A1S3BXT6	0.0	A0A1S3BXT6_CUCME; protein NLP9
STRING	XP_008454098.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3464	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]