PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla012849

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

CAMTA

Protein Properties

Length: 1098aa MW: 122453 Da PI: 5.4915

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla012849	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	182.9	3.5e-57	16	132	2	118
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywl 101 ++ k+rwl++ ei++iL n++k+++t+e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktvrE+hekLKvg+++vl+cyYah+een++fqrr+yw+ Cla012849 16 IEAKHRWLRPAEICEILRNYSKFRITSEPPDRPSSGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVREAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWM 115 4569********************************************************************************************** PP CG-1 102 Leeelekivlvhylevk 118 Lee+l +iv+vhylevk Cla012849 116 LEEHLMHIVFVHYLEVK 132 ************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	82.756	11	137	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	6.0E-81	14	132	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.3E-50	17	131	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	9.9E-8	486	588	IPR013783	Immunoglobulin-like fold
Pfam	PF01833	2.8E-5	502	575	IPR002909	IPT domain
SuperFamily	SSF81296	5.29E-16	503	587	IPR014756	Immunoglobulin E-set
SuperFamily	SSF48403	7.15E-16	683	800	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	3.1E-15	685	801	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.28E-12	688	798	No hit	No description
PROSITE profile	PS50297	17.688	688	810	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	8.549	738	771	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	3.19E-8	920	971	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	0.0099	920	942	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	5.9E-4	922	941	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.261	922	950	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0038	943	965	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.633	944	968	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	2.3E-4	946	965	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0071275	Biological Process	cellular response to aluminum ion
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1098 aa Download sequence Send to blast
MADTAYILAD IEQLLIEAKH RWLRPAEICE ILRNYSKFRI TSEPPDRPSS GSLFLFDRKV 60 LRYFRKDGHK WRKKKDGKTV REAHEKLKVG SIDVLHCYYA HGEENENFQR RSYWMLEEHL 120 MHIVFVHYLE VKGNRTNAGA VVETDEVSSS SQKSSPRSSS YSSSHNQAAS ENADSPSPTS 180 TLTSFCEDAD AEDTYQATSR FHSFPTLPKM GNGLLVNKQD ADQSKFYFPH SSSNNLDAWS 240 SGPSVDYVTQ VQKAGLGSND GDTGVMGSQK TLSSASWEEI LQQCTTGFQT VPSHVLTSSI 300 EPLSSGIVLG QENSIPSKLL TSNSAIKEDF GSSLTMTSNW QVPFEDNTLS FSKEHADQYP 360 DLYSVYDIDS RFEQKSHDST FGSGHEMFSA HPGIENEDIL PNLELQFKEG ELYSAMRLSS 420 ENDMSKEGTI SYSLTLKQSL IDGEESLKKV DSFSRWVSKE LGEVDDLHMH PSSGLSWTTV 480 ECGDMVDDSS LSPSISEDQL FSITAFSPKW TLADLETEVV IIGKFLGNNH GTNCHWSCMF 540 GEVEVPAEVL ADGILCCHAP PHSVGRVPFY VTCSNRVACS EVREFDYLAG SAQDVDVTDI 600 YTVGSTKELC MHLRLERLLS LGSLDPSNDL SEDALEKRNL IRELITIKEE EDLYGEEPNS 660 QNDQIQHQNK DKEFLFVKLM KEKLYSWLIH KVIEGGKGPN ILDGDGQGVI HLAAALGYDW 720 AIRPIVAAGV SINFRDINGW TAVHWAASCG RQELTVGTLM SLDADPGLPS DPSPEFPWGR 780 TPADLASDNG HKGISGFLAE AALTSYVKSV SMADSISMGE AVEDGVADVS KRKPVHTVSE 840 RRATPVNDGF MPGDLSLKDS LTAVCNATQA AGRIHLMFRM QSFQRKKLSE CGTDEFGSSD 900 DSALSFVKAR ARKSGLSNSP VHAAAVQIQK KFRGWRMRKE FLLIRQRIVK IQAHVRGHQV 960 RKQYKKIVWS VGMIDKIILR WRRKGSGLRG FRADAVAKDP PSVMAPPTKE DDYDFLKEGR 1020 RQTEERFQKA LTRVKSMAQY PEGRDQYRRL LTVVQKCRET KGSHMAVTST SEEIIEGDDM 1080 IDIDTLLDDD ALMSMTFD

Sequence ? help Back to Top

Protein Sequence Length: 1098 aa Download sequence Send to blast

MADTAYILAD IEQLLIEAKH RWLRPAEICE ILRNYSKFRI TSEPPDRPSS GSLFLFDRKV  60
LRYFRKDGHK WRKKKDGKTV REAHEKLKVG SIDVLHCYYA HGEENENFQR RSYWMLEEHL  120
MHIVFVHYLE VKGNRTNAGA VVETDEVSSS SQKSSPRSSS YSSSHNQAAS ENADSPSPTS  180
TLTSFCEDAD AEDTYQATSR FHSFPTLPKM GNGLLVNKQD ADQSKFYFPH SSSNNLDAWS  240
SGPSVDYVTQ VQKAGLGSND GDTGVMGSQK TLSSASWEEI LQQCTTGFQT VPSHVLTSSI  300
EPLSSGIVLG QENSIPSKLL TSNSAIKEDF GSSLTMTSNW QVPFEDNTLS FSKEHADQYP  360
DLYSVYDIDS RFEQKSHDST FGSGHEMFSA HPGIENEDIL PNLELQFKEG ELYSAMRLSS  420
ENDMSKEGTI SYSLTLKQSL IDGEESLKKV DSFSRWVSKE LGEVDDLHMH PSSGLSWTTV  480
ECGDMVDDSS LSPSISEDQL FSITAFSPKW TLADLETEVV IIGKFLGNNH GTNCHWSCMF  540
GEVEVPAEVL ADGILCCHAP PHSVGRVPFY VTCSNRVACS EVREFDYLAG SAQDVDVTDI  600
YTVGSTKELC MHLRLERLLS LGSLDPSNDL SEDALEKRNL IRELITIKEE EDLYGEEPNS  660
QNDQIQHQNK DKEFLFVKLM KEKLYSWLIH KVIEGGKGPN ILDGDGQGVI HLAAALGYDW  720
AIRPIVAAGV SINFRDINGW TAVHWAASCG RQELTVGTLM SLDADPGLPS DPSPEFPWGR  780
TPADLASDNG HKGISGFLAE AALTSYVKSV SMADSISMGE AVEDGVADVS KRKPVHTVSE  840
RRATPVNDGF MPGDLSLKDS LTAVCNATQA AGRIHLMFRM QSFQRKKLSE CGTDEFGSSD  900
DSALSFVKAR ARKSGLSNSP VHAAAVQIQK KFRGWRMRKE FLLIRQRIVK IQAHVRGHQV  960
RKQYKKIVWS VGMIDKIILR WRRKGSGLRG FRADAVAKDP PSVMAPPTKE DDYDFLKEGR  1020
RQTEERFQKA LTRVKSMAQY PEGRDQYRRL LTVVQKCRET KGSHMAVTST SEEIIEGDDM  1080
IDIDTLLDDD ALMSMTFD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25627216, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00043	PBM	Transfer from AT5G64220	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:25627216}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681792	0.0	LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBank	LN713255	0.0	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008455205.1	0.0	PREDICTED: calmodulin-binding transcription activator 2 isoform X2
Swissprot	Q6NPP4	0.0	CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBL	A0A1S3C137	0.0	A0A1S3C137_CUCME; calmodulin-binding transcription activator 2 isoform X2
STRING	XP_008455204.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7406	26	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]