PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla013108
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family HB-PHD
Protein Properties Length: 930aa    MW: 103584 Da    PI: 4.6908
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla013108genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox40.74.2e-13749799656
                S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                ++++  le+L + F++n yp ++++e LA++lgL+ +qV+ WF N R   +
  Cla013108 749 RLSQPALERLFASFQENEYPERATKESLAQELGLSLKQVSKWFENTRWSTR 799
                6789999****************************************8766 PP
2PHD37.55.4e-13333388151
                SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
        PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                +C+ Cg+     e++++lCdg C++ fH+ Cl+++l ++++p +   wlC+ C++k
  Cla013108 333 FCAKCGSkeLSLENDIILCDGiCDRGFHQFCLEPPLLNTDIPPDdeGWLCPGCDCK 388
                6999**965556********88*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579036.87E-13323391IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.2E-12329387IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.95331388IPR019787Zinc finger, PHD-finger
PfamPF006281.5E-10333388IPR019787Zinc finger, PHD-finger
CDDcd155043.96E-27333385No hitNo description
SMARTSM002491.8E-9333386IPR001965Zinc finger, PHD-type
PROSITE patternPS013590334385IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.609.5E-14737795IPR009057Homeodomain-like
SuperFamilySSF466891.2E-12739801IPR009057Homeodomain-like
PROSITE profilePS5007113.928741801IPR001356Homeobox domain
SMARTSM003896.7E-12744805IPR001356Homeobox domain
CDDcd000866.44E-12748802No hitNo description
PfamPF000461.1E-10749799IPR001356Homeobox domain
PROSITE patternPS000270776799IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 930 aa     Download sequence    Send to blast
MEERDENTDT ESRPNNNVEA VQEAKACVEV EVLTCLSNEP MHSGYQELGT TPEYSSKTDG  60
PDEEKPGVQH NMELGSGYLL SELSDNNNET ISNHADNDQV EAGNLLSSDK DTENLKLPIE  120
VGATTLLNEC AELPDVNKNY IEQMNPPIED LTQNISIQNL EIVPSNSQQL GHKDKRILKS  180
KKKNYKLRSL VNSDRVLRSR TQEKAKAPEP SNDLNNFTAE EGKRKKRKKK RNIQGKGARV  240
DEYSSIKNHL RYLLNRIKYE QSLIEAYSSE GWKGFSSDKL KPEKELQRAS NEIMRRKLKI  300
RDLFQRIDAL CAEGRLSESL FDSEGQIDSE DIFCAKCGSK ELSLENDIIL CDGICDRGFH  360
QFCLEPPLLN TDIPPDDEGW LCPGCDCKDD CLDLLNEFQG SNLSITDGWE KVYPEAAAAA  420
AGRNSDHTLG LPSDDSEDGD YDPDVPDTID QDSESSSDES SSGQSNSDTS GYASASEGLE  480
VPPPDDQYLG LPSDDSEDDD YDPSVPELDE GVRQESSSSD FTSDSEDLAA LDNNSSXXXX  540
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXRSSKDD DLVSSSLNNT MSLKNSNGQS  600
SRCFPSKSAL HNELSSLLES DPDKDGLEPV SGRRQVERLD YKKLHDETYG SVPTDSSDDT  660
YGSTSMDSSD DRGWDSSTRN RGPKKLVLAW SNNGTNDDLT NVKTKRSYKR RTRQKPAAIN  720
VNNSVTDTPV DTAKSSSSVR QTTSSSNRRL SQPALERLFA SFQENEYPER ATKESLAQEL  780
GLSLKQVSKW FENTRWSTRH PSSSGNRAKS TSRMSIHSSQ ASELPKNEQE SGACFRDTDN  840
NGAQHQDLPT VNNVVASCHS GDTGDKKSVT QKTKRAESSA TKSRKRKSKS DHTASHSKDK  900
EESPRPPAKS PKVDEIQTAD RFKTRRRRSI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222230KRKKRKKKR
2224228KKRKK
3224230KKRKKKR
4882887SRKRKS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818510.0LN681851.1 Cucumis melo genomic scaffold, anchoredscaffold00038.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008456177.10.0PREDICTED: pathogenesis-related homeodomain protein
RefseqXP_008456178.10.0PREDICTED: pathogenesis-related homeodomain protein
RefseqXP_008456179.10.0PREDICTED: pathogenesis-related homeodomain protein
TrEMBLA0A1S3C2830.0A0A1S3C283_CUCME; pathogenesis-related homeodomain protein
STRINGXP_008456177.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84373141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.13e-76Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain