PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla013223
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family B3
Protein Properties Length: 135aa    MW: 15395.2 Da    PI: 9.0017
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla013223genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.12.4e-11561074393
                S-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..E CS
         B3  43 grsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelv 93 
                 ++W++ + y +++++ +  k Wk+Fv++ngLk gD +vF+l   + +  +++
  Cla013223  56 EKVWKIDY-YGNRRSKALDPKQWKKFVNDNGLKCGDACVFELLeCSsTLLKFR 107
                489*****.65555567788*********************762333333444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-1220109IPR015300DNA-binding pseudobarrel domain
CDDcd100171.82E-1321112No hitNo description
Gene3DG3DSA:2.40.330.102.5E-1222112IPR015300DNA-binding pseudobarrel domain
PfamPF023624.7E-956102IPR003340B3 DNA binding domain
PROSITE profilePS508639.91157114IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MEPPQNGEIL PLLGKLYHPF ILSKSHAPPI YNICLPTKFH SVLPALMIPT AILCGEKVWK  60
IDYYGNRRSK ALDPKQWKKF VNDNGLKCGD ACVFELLECS STLLKFRVQI LRGHIPFQLH  120
HKFSGETKDI PIIID
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818542e-82LN681854.1 Cucumis melo genomic scaffold, anchoredscaffold00042.
GenBankLN7132602e-82LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022974195.13e-67B3 domain-containing protein Os04g0386900-like
RefseqXP_022974196.13e-67B3 domain-containing protein Os04g0386900-like
RefseqXP_022974197.13e-67B3 domain-containing protein Os04g0386900-like
RefseqXP_022975683.13e-67B3 domain-containing protein Os04g0386900-like
RefseqXP_022975684.13e-67B3 domain-containing protein Os04g0386900-like
RefseqXP_022975685.13e-67B3 domain-containing protein Os04g0386900-like
TrEMBLA0A0A0L3V32e-64A0A0A0L3V3_CUCSA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97222640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-07B3 family protein