PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla013228
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GRAS
Protein Properties Length: 571aa    MW: 62108.2 Da    PI: 5.1501
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla013228genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS413.81.6e-1261925531374
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                lv+ Ll+cA+av++++l+la+alL++++ l+  ++ +m+++a yf++AL++r++r     y   p ++ + ++ss +   +  f+e +P+lkf+h+taNq
  Cla013228 192 LVHSLLACADAVHTNNLNLAEALLKHIRILVEAQAGAMRKVAGYFAQALSRRIYR----FY---PQKPFD-YSSSYTDLLQMHFYESCPYLKFAHFTANQ 283
                689****************************************************....33...444444.333333344456***************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
                aIle+v ++ +vH++Df+++qG QWp+L+qa+a Rp+gpp + +Tg+++p ++ s++ l+e+g++La+fA+++gv+fef+ + +++l+dle++ L+++  
  Cla013228 284 AILESVGSAGTVHVVDFNLQQGHQWPPLIQAFALRPGGPPAFHLTGIHPPPEEnSTDGLQEVGSKLAQFADKFGVKFEFRGFFCNNLADLEPSILNLE-T 382
                ************************************************988778*****************************************986.6 PP

       GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299
                E++a+n++++lhrll++++++e+     L ++k+l+Pk+v+vveq adhn++sF+erf+eal+yys+lfdsle +  ++ ee+++ ++e+lgr+i+nvva
  Cla013228 383 ETVAINSIFELHRLLANPGAIEK----ALTTIKELNPKIVTVVEQVADHNGPSFVERFTEALHYYSSLFDSLEGS--PAGEEDVVRSEEYLGRQICNVVA 476
                ***********************....**********************************************99..4556777777777********** PP

       GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk.vk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                ceg++r+erhet+++Wr+rl+++GF+ v+++++a kqa++ll+  ++ ++gyrvee++gsl+lgW++rpL+++SaW+
  Cla013228 477 CEGSDRVERHETVAQWRSRLRSSGFEMVHMGSNAFKQASTLLAAlFGgGNGYRVEENNGSLTLGWHTRPLIATSAWT 553
                ***************************************99975166899**************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011291.2E-3132105No hitNo description
PfamPF120414.2E-343298IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098562.487166531IPR005202Transcription factor GRAS
PfamPF035145.6E-124192553IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MKRGHTHQSS NSAAAAAGNP KTWAVEDEED DDKHLAALGY NVRSSDMADV ALKLEQLEMV  60
MGLSEEDGIS HLSSNTVHYN PSDVSSWVQS MLAELNTPLQ SQGITHDPVL AIAESTSSSI  120
AAAFTDDSEY DLRAIPGVAA FPQIDSTNPR KRFKKSDSES LLVTASSSSS SSSSEQSRSV  180
VLVDSAETGV RLVHSLLACA DAVHTNNLNL AEALLKHIRI LVEAQAGAMR KVAGYFAQAL  240
SRRIYRFYPQ KPFDYSSSYT DLLQMHFYES CPYLKFAHFT ANQAILESVG SAGTVHVVDF  300
NLQQGHQWPP LIQAFALRPG GPPAFHLTGI HPPPEENSTD GLQEVGSKLA QFADKFGVKF  360
EFRGFFCNNL ADLEPSILNL ETETVAINSI FELHRLLANP GAIEKALTTI KELNPKIVTV  420
VEQVADHNGP SFVERFTEAL HYYSSLFDSL EGSPAGEEDV VRSEEYLGRQ ICNVVACEGS  480
DRVERHETVA QWRSRLRSSG FEMVHMGSNA FKQASTLLAA LFGGGNGYRV EENNGSLTLG  540
WHTRPLIATS AWTLAGGGDS GESTRPSSGQ I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-6319955326379Protein SCARECROW
5b3h_A1e-6319955325378Protein SCARECROW
5b3h_D1e-6319955325378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269|PubMed:15347801}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818540.0LN681854.1 Cucumis melo genomic scaffold, anchoredscaffold00042.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004145854.10.0PREDICTED: DELLA protein GAI
SwissprotQ7Y1B60.0GAI_SOLLC; DELLA protein GAI
TrEMBLW6JXD40.0W6JXD4_CUCSA; Gibberellin DELLA protein
STRINGXP_004145854.10.0(Cucumis sativus)
STRINGXP_004166381.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein
Publications ? help Back to Top
  1. Nir I, et al.
    The Tomato DELLA Protein PROCERA Acts in Guard Cells to Promote Stomatal Closure.
    Plant Cell, 2017. 29(12): p. 3186-3197
    [PMID:29150547]