PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla013237
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 254aa    MW: 28287.8 Da    PI: 6.5111
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla013237genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH322.2e-10165212455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR++iN+++  L+ ++P +    +k +  a++L ++++Y++sLq
  Cla013237 165 SHSLAERVRREKINNKLKCLQNIIPGC----HKAMGMAMVLDETINYVHSLQ 212
                8*************************9....788*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.53E-10159216No hitNo description
SuperFamilySSF474595.23E-17159224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-17161223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.951161211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.8E-8165212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-9167217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MTEFRQDLQH FKSSKASEER GLNMEVTNQF SNVTESMFEG FNETEFSVEN VWGYHFQLPE  60
NTTPSSLPSF PCVTLLKCQN EFPVITRSSL LVDSAQETMQ RKAKQVSESN SGSLCAAFGD  120
DSSNVSPAKA SNLGGGRKRR NCEKEQEKPA EVVHVRAKRG QATDSHSLAE RVRREKINNK  180
LKCLQNIIPG CHKAMGMAMV LDETINYVHS LQNQVEFLSM ELAAACSTLG INFGMGAIRK  240
ALGTRSDEEQ EIEK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818541e-105LN681854.1 Cucumis melo genomic scaffold, anchoredscaffold00042.
GenBankLN7132601e-105LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022148276.11e-153transcription factor bHLH75-like isoform X2
TrEMBLA0A1S3C4G71e-138A0A1S3C4G7_CUCME; transcription factor BEE 3-like isoform X1
STRINGXP_008456994.11e-105(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144121218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25330.13e-42bHLH family protein