PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla013275
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family WOX
Protein Properties Length: 185aa    MW: 21350.8 Da    PI: 6.8623
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla013275genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox629.3e-201170357
               --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
               +R+++t+eq+ +Lee +++  ++p+a+++++++++l    +++ ++V++WFqN++a++++
  Cla013275 11 SRWCPTPEQVMILEEIYRNgLKTPNATQIQHITSHLslygKIEGKNVFYWFQNHKARDRQ 70
               7*****************99*************************************996 PP
2Wus_type_Homeobox1178.8e-381071364
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                        +RW+PtpeQ++iLee+y++Gl+tPn+ +iq+it++L+ yGkie+kNVfyWFQN+kaR+rqk
          Cla013275 10 PSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQK 71
                       58***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003899.7E-6875IPR001356Homeobox domain
SuperFamilySSF466893.98E-111171IPR009057Homeodomain-like
PfamPF000462.0E-171170IPR001356Homeobox domain
CDDcd000861.66E-41271No hitNo description
Gene3DG3DSA:1.10.10.608.7E-81270IPR009057Homeodomain-like
PROSITE profilePS500719.6041671IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MSPAAGITTP SRWCPTPEQV MILEEIYRNG LKTPNATQIQ HITSHLSLYG KIEGKNVFYW  60
FQNHKARDRQ KLRRKLYKQL QQHHFLMKRH RFDEHNQFFQ YFLPQHHQLV PQLLPLPSPS  120
SHQREGEEEA ATEVEGGGDE GRTVAEEDGE TTCRTGTLRT LELFPVRASW VEEEEGTSGN  180
GGWGN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819221e-99LN681922.1 Cucumis melo genomic scaffold, anchoredscaffold00082.
GenBankLN7132651e-99LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008463857.13e-98PREDICTED: WUSCHEL-related homeobox 3
TrEMBLA0A1S3CK698e-97A0A1S3CK69_CUCME; WUSCHEL-related homeobox 3
STRINGXP_008463857.11e-97(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106322940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.14e-39WOX family protein