PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla013282
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 156aa    MW: 16973.3 Da    PI: 7.8361
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla013282genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.000623254123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C+ C++ Fs+   L  H  +H
  Cla013282 32 FVCKTCNREFSSFQALGGHRASH 54
               89**********99999998887 PP
2zf-C2H211.60.000897698123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C++Cg  F+    L  H+r+H
  Cla013282 76 HECSICGVEFPVGQALGGHMRRH 98
               78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.25E-93098No hitNo description
PfamPF139129.8E-133156IPR007087Zinc finger, C2H2
PROSITE profilePS501579.9723259IPR007087Zinc finger, C2H2
SMARTSM003550.243254IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803454IPR007087Zinc finger, C2H2
PfamPF139123.3E-117599IPR007087Zinc finger, C2H2
SMARTSM003550.147698IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.61676103IPR007087Zinc finger, C2H2
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MKRFRLESQI NALEMADSLI SSTAPEFRPR VFVCKTCNRE FSSFQALGGH RASHRKPKLS  60
SSGDVFQNNQ IKTKVHECSI CGVEFPVGQA LGGHMRRHRN SSPPVDDRPP MAQPVSDDSD  120
CDGGVGGGVG LDLNLTPLEN DLVRLQLMAP PVGCLT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023532317.11e-76zinc finger protein ZAT11-like
SwissprotQ9SLD48e-29ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A1S3BJI52e-72A0A1S3BJI5_CUCME; zinc finger protein ZAT11
STRINGXP_008448374.14e-73(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.15e-29C2H2 family protein