PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla013316
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB_related
Protein Properties Length: 511aa    MW: 56990.6 Da    PI: 9.9733
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla013316genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.42.9e-07406455147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++ +E e lv+av+ lG+g+W+ +  +     k+Rt  ++k++w ++
        Cla013316 406 RRPFSVDEVEALVHAVETLGPGRWRDVKLRAFdnvKHRTYVDLKDKWKTL 455
                      6799**********************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542363.72E-6212286IPR029071Ubiquitin-related domain
CDDcd017690.0055221290No hitNo description
PROSITE profilePS5129415.136401460IPR017930Myb domain
SuperFamilySSF466897.1E-16403497IPR009057Homeodomain-like
SMARTSM007171.3E-6405458IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-10406456IPR009057Homeodomain-like
CDDcd116601.56E-16407457No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MENPANEVGF ASHIKSYGRN LDGEYEIMVK DEFEKVMSGI DIATCRSLDP VVCDRSPHLW  60
IGSESGFNVP PCKDHDSQHP CPTSQEVVVR DDDSNSFGCI YPTTSRNSFK TASCTKGHRI  120
RKILASKNWK VAAKYGAKKP KTGGYKRKFN FNKRNSYKNQ RSQMNIPFKK RKLFDGCFSD  180
CNGRRIVDRI SDSNASPRES SAHGKSSLVA GHQGDSRVKL RIKSFRVPEL FIEIPETATV  240
SSLKMTVMQA VGPIIGHGIH VGVILRGKKV RDDNKTLIQT GISRNNQDGC LGFTLEPHSS  300
QTHSSCYGEP PSMLPFSSTL EPMNGCPPNP TVDYSGNNST LLLETHAAKV SNAREPVPTL  360
ADTPVEERSS DSKSLVTVPA MAVEAPTVVP VCRKSNQFEV GHRRMRRPFS VDEVEALVHA  420
VETLGPGRWR DVKLRAFDNV KHRTYVDLKD KWKTLVHTAK ISPHQRRGEQ VPQQLLDRVL  480
TAHAYWSQQH HQQIKHHPPK NLSSSTKPSG N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-483904931104Telomere binding protein TBP1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819191e-113LN681919.1 Cucumis melo genomic scaffold, anchoredscaffold00084.
GenBankLN7132651e-113LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143123.10.0PREDICTED: telomere repeat-binding protein 5-like
RefseqXP_011657146.10.0PREDICTED: telomere repeat-binding protein 5-like
RefseqXP_011657147.10.0PREDICTED: telomere repeat-binding protein 5-like
TrEMBLA0A0A0KBR70.0A0A0A0KBR7_CUCSA; Uncharacterized protein
STRINGXP_004166195.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2466833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.13e-90TRF-like 2