PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla013351
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 301aa    MW: 33023.4 Da    PI: 6.2384
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla013351genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.2e-056487123
               EEETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
               ++C+ Cg+ F+   +L++H++  H
  Cla013351 64 FPCTACGEIFPKAQLLEQHQSIkH 87
               89******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.7436492IPR007087Zinc finger, C2H2
PROSITE patternPS0002806687IPR007087Zinc finger, C2H2
SuperFamilySSF563991.25E-1390300No hitNo description
Gene3DG3DSA:3.90.228.101.0E-591206IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene3DG3DSA:3.90.228.105.7E-5234300IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MAIETARSPS TPARSSQHSI VTLIQQEIPP PPIPETHPPT GTPQDSDITT AEPNQSFPLR  60
NDIFPCTACG EIFPKAQLLE QHQSIKHAVS ELADSDSGKN IVRIIFETGW TSREKSPKIL  120
RILKIHNSQK ILSRFEEYRE TVKAKAAIHG GVKRRDERCI ADGNELLRFH CSTFLCDLGQ  180
NGNSSLCGQQ FCSICGIIKS GFSHKLDGIS TLSSSWRAHV AIPEDIEEEF KFLNAKRAIL  240
VCRVVAGRVG SDADEPEKDG GGFDSVVGRS GSGAQTTLDE EELLVFNPRA VLPCFAIVYE  300
I
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819190.0LN681919.1 Cucumis melo genomic scaffold, anchoredscaffold00084.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143213.20.0PREDICTED: uncharacterized protein LOC101205506, partial
RefseqXP_008464051.10.0PREDICTED: uncharacterized protein LOC103502032
TrEMBLA0A1S3CKL20.0A0A1S3CKL2_CUCME; uncharacterized protein LOC103502032
STRINGXP_004143213.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106682936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-109C2H2 family protein