PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla013390

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

LBD

Protein Properties

Length: 161aa MW: 17928.2 Da PI: 4.8891

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla013390	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.2	2.4e-42	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +Ca+Ck+lrr+CakdC++apyfp+++p kfa+vhk+FGasnv+k+l+++p e+r da+ss+vyeA ar+rdPvyG+vg+i+ lq+++++l+ +l ++++e Cla013390 7 PCASCKLLRRRCAKDCIFAPYFPSDDPFKFAIVHKIFGASNVSKMLQEVPIEQRADAVSSMVYEASARMRDPVYGCVGTISFLQNEVSRLEMQLGAAQAE 106 7********************************************************************************************9999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.2	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.8E-41	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MGAGSSPCAS CKLLRRRCAK DCIFAPYFPS DDPFKFAIVH KIFGASNVSK MLQEVPIEQR 60 ADAVSSMVYE ASARMRDPVY GCVGTISFLQ NEVSRLEMQL GAAQAEILTL HMQQQATPTT 120 FPTTTTHTDQ DDQNLVIFSN ADSSNSFHIF QEEGDYYPLW T

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-47	2	125	7	130	LOB family transfactor Ramosa2.1
5ly0_B	3e-47	2	125	7	130	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004143222.1	2e-95	PREDICTED: LOB domain-containing protein 12
Swissprot	Q8LBW3	2e-66	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A0A0KBK5	4e-94	A0A0A0KBK5_CUCSA; Uncharacterized protein
STRING	XP_004162401.1	7e-95	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1664	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	5e-66	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]