PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla013417
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB_related
Protein Properties Length: 591aa    MW: 67251.4 Da    PI: 7.0372
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla013417genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.41.8e-09540588247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      ++W+  E++ l  av+++G+g+Wk+I +        Rt+ ++k++w++ 
        Cla013417 540 KKWSLLEEDTLRIAVQRFGKGNWKLILNSYRdifDERTEVDLKDKWRNM 588
                      58********************************99***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.234531591IPR017930Myb domain
SMARTSM007175.5E-5538591IPR001005SANT/Myb domain
PfamPF002493.3E-8540588IPR001005SANT/Myb domain
CDDcd116603.77E-17540590No hitNo description
Gene3DG3DSA:1.10.10.604.2E-10541590IPR009057Homeodomain-like
SuperFamilySSF466894.4E-13541590IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MDDDICRWII EFILRSPMDN HLQKRVMAVV PLSDKDFRLK KTVLLKSIES EILEVVLTEK  60
LLGIFELIEQ LDKAEGLALM ESMKAAYCAV AVECTVKFLL VEGICKHGRY FDAVKRIWRG  120
RVTELERSGK SELVSRELKA WKDEFEASLC DKNIRKKLMH VNTRYDALKL TGDYLSEVWA  180
VMGPSFIQLS ASLMDKRMVN GMQPIQLGQE TNKFASERED VGGSAGIELP SQTDNRAGPK  240
WQGRGGVLSQ PRTRTDLPNS HQDLGTNEDS KQPAIVAMTT ERVQELATET AEGQESVEKE  300
VAVLHNPSPH RDERVQELAT ETAEGQESVE KEVAVLHNPS PRQDENVRTS AMPRCKSLAF  360
HRRVRGARLS QLEDLENEND NSFERYTRLD TPEVNRVREA LRTSSLELQA VVKDPLPDAL  420
RIAESVANDL AERNKTCENP LEGRNDAGAT NPTINKGVLP LQSVSANLKN PGYGHKTVFP  480
RPSIMERNST ACTYEWNDSI DDSPEGSHAN RLRLPSPKRK VISPLKKYEE TKVVRRRQCK  540
KWSLLEEDTL RIAVQRFGKG NWKLILNSYR DIFDERTEVD LKDKWRNMTR Y
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819200.0LN681920.1 Cucumis melo genomic scaffold, anchoredscaffold00113.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008465305.10.0PREDICTED: uncharacterized protein LOC103502960 isoform X1
TrEMBLA0A1S3CNK20.0A0A1S3CNK2_CUCME; uncharacterized protein LOC103502960 isoform X1
STRINGXP_008465305.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28243260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.11e-21TRF-like 5