PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla013418

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

bZIP

Protein Properties

Length: 377aa MW: 40775.5 Da PI: 7.0247

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla013418	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32	2.6e-10	178	226	5	53
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l + Cla013418 178 KRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLFQ 226 9****************************************99887655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.7E-16	174	238	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.829	176	239	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.5E-10	178	232	No hit	No description
SuperFamily	SSF57959	6.96E-11	178	229	No hit	No description
Pfam	PF00170	1.3E-8	178	226	IPR004827	Basic-leucine zipper domain
CDD	cd14703	5.96E-22	179	228	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MQDPAPSNPI HTPNSNQIPP LNVAAPPPKT HKPPPVANAT ASSSSMFANA NTGNTSFMPR 60 VGSHHRRAHS EVSFRLPEDM MDISALEEIG SEDDLFSTYI DVKKLGGNGG GNFVDHNGNG 120 GSEGAGGSEG EKTSKPRHRH SVSVDGTTSS SSMFGEIMEA KKAMPPDKLA ELWSSDPKRA 180 KRILANRQSA ARSKERKARY IQELERKVQT LQTEATTLSA QLTLFQRDTT GLSTENTELK 240 LRLQAMEQQA QLRDALNEAL KKEVERLKIA TGEMMSPSES FNLGMHHMAY APSSFIQLSQ 300 QQPGSVGLQN MQMPPYSHSP SNMTTHPLLP SESHSLSEVL QTDSLGRLQG LDISSKGSSL 360 VKSEGPSLSA SESSTTF

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MQDPAPSNPI HTPNSNQIPP LNVAAPPPKT HKPPPVANAT ASSSSMFANA NTGNTSFMPR  60
VGSHHRRAHS EVSFRLPEDM MDISALEEIG SEDDLFSTYI DVKKLGGNGG GNFVDHNGNG  120
GSEGAGGSEG EKTSKPRHRH SVSVDGTTSS SSMFGEIMEA KKAMPPDKLA ELWSSDPKRA  180
KRILANRQSA ARSKERKARY IQELERKVQT LQTEATTLSA QLTLFQRDTT GLSTENTELK  240
LRLQAMEQQA QLRDALNEAL KKEVERLKIA TGEMMSPSES FNLGMHHMAY APSSFIQLSQ  300
QQPGSVGLQN MQMPPYSHSP SNMTTHPLLP SESHSLSEVL QTDSLGRLQG LDISSKGSSL  360
VKSEGPSLSA SESSTTF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681920	1e-150	LN681920.1 Cucumis melo genomic scaffold, anchoredscaffold00113.
GenBank	LN713265	1e-150	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004140027.1	0.0	PREDICTED: transcription factor RF2b-like
Swissprot	O22873	1e-109	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A0A0KD34	0.0	A0A0A0KD34_CUCSA; Uncharacterized protein
STRING	XP_004166348.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1548	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	4e-94	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]