PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla013424
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 256aa    MW: 28787.4 Da    PI: 9.3269
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla013424genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.51.1e-20105155155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                ++++GVr+++ +grW+AeIrdp    +r kr++lg+f+taeeAa+ +++a+ kl g
  Cla013424 105 KKFRGVRQRP-WGRWAAEIRDP----IRrKRIWLGTFDTAEEAAAVYDRAAVKLQG 155
                59********.**********7....246**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.2E-533253IPR017392AP2/ERF transcription factor ERF/PTI6
SMARTSM003809.5E-34106169IPR001471AP2/ERF domain
PROSITE profilePS5103223.538106163IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-22106163IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.3E-30106163IPR001471AP2/ERF domain
PfamPF008476.3E-13106155IPR001471AP2/ERF domain
PRINTSPR003671.4E-10107118IPR001471AP2/ERF domain
CDDcd000184.27E-29109162No hitNo description
PRINTSPR003671.4E-10129145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MAMEDMASLS EHKINYRRKP LTSGDSTKFK QKLVRIIVTD ADATDSSSED ELILRSRTAI  60
RREVREITIK RYSALDGSSA KSSVSEICKK RNPRSRRSRK SSRRKKFRGV RQRPWGRWAA  120
EIRDPIRRKR IWLGTFDTAE EAAAVYDRAA VKLQGPNATT NFSGDGSVTT VADGGSKQED  180
GLESRKTTAA WSPASVLHYD SVLTPIEEML YCGEIDEFGF AMAPSSLPAA RRQCGGEEDF  240
GEMELDLDYF LVDVIY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-19105162462ATERF1
3gcc_A9e-19105162462ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
188105KKRNPRSRRSRKSSRRKK
293105RSRRSRKSSRRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016901953.11e-143PREDICTED: ethylene-responsive transcription factor ERF069-like
TrEMBLA0A1S4E1551e-142A0A1S4E155_CUCME; ethylene-responsive transcription factor ERF069-like
STRINGXP_008456258.11e-143(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55853252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.14e-19cytokinin response factor 4