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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Cla013537 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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| Family | G2-like | ||||||||
| Protein Properties | Length: 134aa MW: 15069.6 Da PI: 6.2784 | ||||||||
| Description | G2-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 102.6 | 2.4e-32 | 64 | 117 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
prlrWtp+LH +Fv+ave+LGG+e+AtPk +l+lm+v gL+++hvkSHLQ+YR+
Cla013537 64 PRLRWTPDLHLAFVNAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRS 117
8****************************************************7 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.10.60 | 2.0E-30 | 60 | 118 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS51294 | 12.297 | 60 | 120 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 6.81E-15 | 62 | 118 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 5.4E-24 | 64 | 119 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 9.2E-10 | 65 | 116 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 134 aa Download sequence Send to blast |
MINGFDLNEE AKGIDEGFGE ENSNNSNSNT SSNNGSMEEA EKEEEEEEQR RSGSVRKYSR 60 SKMPRLRWTP DLHLAFVNAV ERLGGQERAT PKLVLQLMNV RGLSIAHVKS HLQMYRSKKL 120 DESGQGRVSN SITS |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6j4k_A | 7e-21 | 65 | 119 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4k_B | 7e-21 | 65 | 119 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_A | 7e-21 | 65 | 119 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_B | 7e-21 | 65 | 119 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_C | 7e-21 | 65 | 119 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_D | 7e-21 | 65 | 119 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_A | 7e-21 | 65 | 119 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_C | 7e-21 | 65 | 119 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_D | 7e-21 | 65 | 119 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_F | 7e-21 | 65 | 119 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_H | 7e-21 | 65 | 119 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_J | 7e-21 | 65 | 119 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Putative transcription factor. | |||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | LN681918 | 1e-71 | LN681918.1 Cucumis melo genomic scaffold, anchoredscaffold00020. | |||
| GenBank | LN713265 | 1e-71 | LN713265.1 Cucumis melo genomic chromosome, chr_11. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_008448246.1 | 5e-59 | PREDICTED: probable transcription factor KAN2 isoform X2 | ||||
| Refseq | XP_011657091.1 | 4e-59 | PREDICTED: probable transcription factor KAN4 isoform X2 | ||||
| Refseq | XP_022947230.1 | 2e-58 | uncharacterized protein LOC111451155 | ||||
| Refseq | XP_022947231.1 | 2e-58 | uncharacterized protein LOC111451155 | ||||
| Refseq | XP_023533211.1 | 2e-58 | uncharacterized protein LOC111795167 | ||||
| Swissprot | Q700D9 | 1e-28 | MYBF_ARATH; Putative Myb family transcription factor At1g14600 | ||||
| TrEMBL | A0A0A0KBB2 | 5e-55 | A0A0A0KBB2_CUCSA; Uncharacterized protein | ||||
| TrEMBL | A0A1S3BJ91 | 1e-57 | A0A1S3BJ91_CUCME; probable transcription factor KAN2 isoform X2 | ||||
| STRING | XP_004162479.1 | 9e-56 | (Cucumis sativus) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF3012 | 32 | 70 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G38300.1 | 8e-39 | G2-like family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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