PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla013733

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

C2H2

Protein Properties

Length: 255aa MW: 28477.6 Da PI: 9.5182

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla013733	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0012	43	65	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C ++F++ L H ++H Cla013733 43 YECKTCRRTFPSFQALGGHRSSH 65 99**********99999999988 PP
2	zf-C2H2	12.5	0.00045	121	143	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp Cg F + L H+r+H Cla013733 121 HECPVCGAEFISGQALGGHMRRH 143 79********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	4.7E-11	42	66	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.452	43	70	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.23	43	65	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	9.25E-9	43	65	No hit	No description
PROSITE pattern	PS00028	0	45	65	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	9.25E-9	116	143	No hit	No description
Pfam	PF13912	4.8E-12	120	145	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.016	121	143	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.182	121	143	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	123	143	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MANCLILLSQ ALPASRASSP LGTFIRDPKG PNGASKAASC CAYECKTCRR TFPSFQALGG 60 HRSSHKNAAI AAAADHRPIS GTARPINSNN NVSNQFDQLR KSRTDYNYNK FKLIDHKNKV 120 HECPVCGAEF ISGQALGGHM RRHRRGYGGA PRDSSEIDRR CPKKQRSNLL CLDLNLNLPA 180 PEDDTREKSG CCCNGRHEFG GLPLLITLSI FADGILWFQN EKPPIFVHFF SNIQLLLFIH 240 IFFKNIYYII SIHYL

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681821	1e-108	LN681821.1 Cucumis melo genomic scaffold, anchoredscaffold00040.
GenBank	LN713257	1e-108	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008456545.1	5e-78	PREDICTED: zinc finger protein ZAT5-like
TrEMBL	A0A1S3C335	1e-76	A0A1S3C335_CUCME; zinc finger protein ZAT5-like
STRING	XP_008456545.1	2e-77	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24682	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	7e-20	C2H2 family protein