PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla014014
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GRAS
Protein Properties Length: 469aa    MW: 52584.4 Da    PI: 6.2364
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla014014genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS304.72.2e-93714662373
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvs.elykal.ppsetseknsseelaalklfsevsPilkfshltaN 99 
                ++lL++cA+a++++d++laq++L+ l+++a pdgd++qRl++ f++AL +r +++++ ++ +a+ ++ ++s ++++ +l+ l +f++++P+++f++ +aN
  Cla014014  71 EQLLVHCANAIETNDATLAQQILWVLNNIAPPDGDSNQRLTSAFLRALVTRATNTGNcKILAAItTAFSSSLTTHTFSLMDLAAFVDLTPWHRFGFTAAN 170
                79***************************************************9433133333313333333446666666666**************** PP

       GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvl.......vakrle 187
                 aIl+a+eg + vH++Df++++++Q p+L++a+a+R e pp l++T+v+  + +      + ++ e+g +L +fA++ +v++ef+v+        a+ +e
  Cla014014 171 VAILDAIEGYSVVHVVDFSLMHCMQIPTLIDAIATRFEVPPLLKLTTVAVVAVKdaspmLELSYDELGAKLVNFARSKNVTMEFRVVpschtdgFASLIE 270
                **********************************************9988665567766788889*********************99884444444455 PP

       GRAS 188 dleleeLrvkp.......gEalaVnlvlqlhrll..........desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                +++++     +       +Eal+ n++++lh+++          + ++s++s r+ +Lk+++sl P++vv+v+++ad +s+++++r+ +a++y +  +ds
  Cla014014 271 QIRMQ-----NliygpenNEALVFNCHMMLHYIPeetlnpnpspNFDMSSTSIRSMFLKAIRSLDPTIVVLVDEDADFTSSKLVTRLRSAFNYLWIPYDS 365
                55555.....44444588****************888888888855555666788********************************************* PP

       GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                +++ lpr s++r ++E+  + ++i+nv+a+eg +r++r e +++W +r+ +a F+ vp++e+a++++k +l +++  g+ +++e++ l+l+Wk++ +v++
  Cla014014 366 MDSFLPRSSKQREWYEAD-ICWKIENVIAQEGIQRVQRLEPKGRWVQRMVNAKFRGVPFGEDAVTEVKGMLDEHA-GGWGLKKEEDHLLLTWKGHDVVFA 463
                ******************.********************************************************.7899******************** PP

       GRAS 371 SaW 373
                +aW
  Cla014014 464 TAW 466
                *** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.14644448IPR005202Transcription factor GRAS
PfamPF035147.6E-9171466IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MMQFSETPPR LHQTTTTTTR IIPPSFPEMS MNNKNQITTT GQFRSRRPWP GLFPCSSKAL  60
GTCLGDANCM EQLLVHCANA IETNDATLAQ QILWVLNNIA PPDGDSNQRL TSAFLRALVT  120
RATNTGNCKI LAAITTAFSS SLTTHTFSLM DLAAFVDLTP WHRFGFTAAN VAILDAIEGY  180
SVVHVVDFSL MHCMQIPTLI DAIATRFEVP PLLKLTTVAV VAVKDASPML ELSYDELGAK  240
LVNFARSKNV TMEFRVVPSC HTDGFASLIE QIRMQNLIYG PENNEALVFN CHMMLHYIPE  300
ETLNPNPSPN FDMSSTSIRS MFLKAIRSLD PTIVVLVDED ADFTSSKLVT RLRSAFNYLW  360
IPYDSMDSFL PRSSKQREWY EADICWKIEN VIAQEGIQRV QRLEPKGRWV QRMVNAKFRG  420
VPFGEDAVTE VKGMLDEHAG GWGLKKEEDH LLLTWKGHDV VFATAWVPC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B3e-496546882474Protein SHORT-ROOT
5b3h_B8e-506546828420Protein SHORT-ROOT
5b3h_E8e-506546828420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008440362.10.0PREDICTED: scarecrow-like protein 32
SwissprotQ9SN221e-175SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A1S3B0Z70.0A0A1S3B0Z7_CUCME; scarecrow-like protein 32
STRINGXP_008440362.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77023347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-166GRAS family protein