PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla014072
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 321aa    MW: 36147.4 Da    PI: 5.0038
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla014072genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH382.9e-12141187455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 h ++ErrRR+++ ++f  L  l+P +      K++Ka+iL  A++++k+Lq
  Cla014072 141 EHVIAERRRRQKLSQRFIALSALIPDL-----NKVDKASILGGAIRHVKELQ 187
                599***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.64137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-15141198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-10141187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.61E-13142191No hitNo description
SuperFamilySSF474593.93E-15142200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-14143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEISSSTRWI SEWEIEDAPP FMDEFKIDPF DFSFDEFKFE EYSGGTDFYG WPVPPSAVVE  60
DGGIKCQIYG SNYKTDWSSS SSHTISFDSS NCKSGNGSVN LGMAGYESVN IISESYWNNN  120
EKSWKRSCCS MNRNNGLHAR EHVIAERRRR QKLSQRFIAL SALIPDLNKV DKASILGGAI  180
RHVKELQERL KVVEEQATSK MSEAKSAVYV KRTNLQVSST DDDTSSSDYD SFSGRPTPEI  240
EARFSNKDVL IRIHCQNRKG CLSYLLDKID NLNNLTILNS CALPFGQSNL DITIVAQVDV  300
GFCMTGEDVV KNLRQALLDF N
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023518686.11e-125transcription factor bHLH19-like
TrEMBLA0A1S3B1721e-114A0A1S3B172_CUCME; transcription factor bHLH18-like
STRINGXP_008440466.11e-115(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2469233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.15e-46bHLH family protein