PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla014118

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

ZF-HD

Protein Properties

Length: 104aa MW: 11008.2 Da PI: 4.8383

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla014118	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	52	1.7e-16	48	77	3	33
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpseg 33 k +Y+eClkNhA+ +Ggha+DGCgEf+++ g Cla014118 48 KPKYRECLKNHAVGIGGHALDGCGEFLAA-G 77 679************************98.3 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	2.4E-13	50	78	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	4.0E-9	50	77	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	7.5E-15	50	77	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	17.332	51	102	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 104 aa Download sequence Send to blast
MDFEDQDEHE EEEMEMAAAS YDSLPNSGGR LKIPTSTDQM ISSTGQRKPK YRECLKNHAV 60 GIGGHALDGC GEFLAAGASP LLNAPLATAT ATSTARKPTA STRP

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	8e-75	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	8e-75	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008440565.1	2e-34	PREDICTED: zinc-finger homeodomain protein 1-like
TrEMBL	A0A1S3B1E1	5e-33	A0A1S3B1E1_CUCME; zinc-finger homeodomain protein 1-like
STRING	XP_008440565.1	8e-34	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF31200	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	5e-11	homeobox protein 21