PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla014139
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 373aa    MW: 41625.9 Da    PI: 5.9057
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla014139genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.82.4e-07153174223
                EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                 C++Cgk F+r  nL+ H+r H
  Cla014139 153 FCEICGKGFKRDANLRMHMRAH 174
                6*******************99 PP
2zf-C2H212.10.00058240263123
                EEETTTT.EEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                ++C+ C+ ksFs   +Lk+H++ +
  Cla014139 240 FSCNRCNkKSFSVMADLKSHLKHC 263
                89*******************977 PP
3zf-C2H211.30.0011272287621
                TTEEESSHHHHHHHHH CS
    zf-C2H2   6 CgksFsrksnLkrHir 21 
                Cg++Fsrk+ L  H+ 
  Cla014139 272 CGTTFSRKDKLFGHMA 287
                **************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.48E-6149175No hitNo description
PROSITE profilePS5015711.967152179IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-5152174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0015152174IPR015880Zinc finger, C2H2-like
PfamPF128740.002153172No hitNo description
PROSITE patternPS000280154174IPR007087Zinc finger, C2H2
SMARTSM00355100202235IPR015880Zinc finger, C2H2-like
SMARTSM0035518240262IPR015880Zinc finger, C2H2-like
SMARTSM00355210268292IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MNPPTFPMEF SGDPLPTTII GSGDPRIPLQ NLSTIRSRMD DVQIFLSDNI DREVRITNQQ  60
MDAVSSEIAT AIQQIIINGA ALLAYAEAKT PTAPDLTAST TRTQPNPVTQ KSMVELKVEG  120
VDEITRTESE EFDSDWEIAE LDAMELLAEH IHFCEICGKG FKRDANLRMH MRAHGNQFKT  180
PEALAKPLDV VGADHRAKRT RFSCPYDGCV RNKMHKKFRA LKSLICVKNH FKRSHCPKMF  240
SCNRCNKKSF SVMADLKSHL KHCGESKWRC SCGTTFSRKD KLFGHMALFE GHMPAVPDDA  300
SASAATSEMD EDGDSNQISK DVNFPNASNG SSDDGSFESF LDGFGSIENH CLQEVLGFPY  360
DFDSESEWKF CGF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008440589.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
TrEMBLA0A1S3B2300.0A0A1S3B230_CUCME; protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
STRINGXP_008440589.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68553150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.22e-77C2H2 family protein