PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla014195
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bZIP
Protein Properties Length: 367aa    MW: 38655.4 Da    PI: 6.7966
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla014195genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_175.76e-24267329163
                XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+ +v++L +eN++L++el++l++e++kl+se+
  Cla014195 267 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVQTLNNENRTLRDELQRLSEECEKLTSEN 329
                89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077772.5E-33194IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1701.1E-19261326No hitNo description
PfamPF001703.3E-21267329IPR004827Basic-leucine zipper domain
SMARTSM003384.5E-22267331IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.507269332IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.0E-11270326No hitNo description
CDDcd147021.77E-25272322No hitNo description
PROSITE patternPS000360274289IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010629Biological Processnegative regulation of gene expression
GO:0090342Biological Processregulation of cell aging
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MGTGEEGTPS KTSKPPSSSQ EIAPTPSYPD WSSSMQAYYG AGATPPPFFA STVASPTPHP  60
YLWGGQHPLM PPYGTPVPYP AIYPPGGVYA HPNITVTPGS VPINAEYEGK SPDGKERASK  120
KSKGMSGNTA SGGGRTGESG KVASSSGNDG ASQSAESGTE GSSEGSDENA NQQEFAANKK  180
GSFNQMLADG ANAQNNTGGP NGKSSVTGKP ITSIPGTNLN MGMDLWNTTT AAPGAGKVRG  240
NAVSSAIVTV PMVGRDGVMP EQWVQDEREL KRQKRKQSNR ESARRSRLRK QAECEELQAR  300
VQTLNNENRT LRDELQRLSE ECEKLTSENT SIKEELTRFC GPEALANFEK GTTAPPAQSR  360
GSGEGKD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1283289RRSRLRK
2283290RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00039PBMTransfer from AT4G36730Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818759e-84LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132629e-84LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011658003.10.0PREDICTED: G-box-binding factor 1
RefseqXP_011658004.10.0PREDICTED: G-box-binding factor 1
SwissprotP427741e-120GBF1_ARATH; G-box-binding factor 1
TrEMBLA0A0A0KGY00.0A0A0A0KGY0_CUCSA; Uncharacterized protein
STRINGXP_008440691.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59333450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.11e-107G-box binding factor 1
Publications ? help Back to Top
  1. Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S
    Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development.
    Mol Plant, 2013. 6(6): p. 1758-68
    [PMID:24157607]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Karumuri S,Bandopadhyay R
    In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
    Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
    [PMID:25630103]
  4. Smykowski A,Zimmermann P,Zentgraf U
    CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 1164-7
    [PMID:26826725]
  5. Smykowski A,Fischer SM,Zentgraf U
    Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1.
    Plants (Basel), 2015. 4(3): p. 691-709
    [PMID:27135347]
  6. Giri MK, et al.
    GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana.
    Plant J., 2017. 91(5): p. 802-815
    [PMID:28622438]