PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla014247
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bZIP
Protein Properties Length: 159aa    MW: 18414.5 Da    PI: 8.4987
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla014247genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_144.72.9e-142987563
               CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
               ++ rr+q+NRe+ArrsR+RK++ +  L+  v +L++ N ++  +++ + +++ +l++e+
  Cla014247 29 RKRRRMQSNRESARRSRLRKQKHLHDLTHQVSQLKKHNNEMVTNMNVMANLCVNLEAEN 87
               4568899************************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.1E-1024104No hitNo description
SMARTSM003383.4E-132589IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.8872790IPR004827Basic-leucine zipper domain
PfamPF001701.2E-112987IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.54E-112982No hitNo description
CDDcd147023.44E-163080No hitNo description
PROSITE patternPS0003603247IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MASSNGASSG SANGSIRTSG SEDDREVERK RRRMQSNRES ARRSRLRKQK HLHDLTHQVS  60
QLKKHNNEMV TNMNVMANLC VNLEAENSIL RAQMAELTHR LRSLNDVVMF INSMQVFETF  120
LVDEVGDLNN GFEEEYHYNP WRYPFANYNS NTQIIAHKD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12832RKRRR
22849RKRRRMQSNRESARRSRLRKQK
34147RRSRLRK
44148RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008440768.14e-63PREDICTED: bZIP transcription factor 53-like
SwissprotC0Z2L53e-30BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A1S3B1Y19e-62A0A1S3B1Y1_CUCME; bZIP transcription factor 53-like
STRINGXP_008440768.12e-62(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2469733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.17e-27basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]