PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla014267

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

DBB

Protein Properties

Length: 169aa MW: 18994.8 Da PI: 6.7505

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla014267	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.7	9.6e-08	4	33	5	34
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ ++lfC ++ lC+ C ++ H Cla014267 4 LCDSCESAAATLFCAADEAALCAICDTKVH 33 6**************************998 PP
2	zf-B_box	27.4	6.9e-09	52	92	2	38
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38 e ++C+ +e+ ++ ++Ce +++ lC +C + H g H+ Cla014267 52 EVPRCDICENAPAFFYCEIDGSSLCLQCDVIVHVGgkrmHK 92 789***************************99966666776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.552	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	1.03E-6	3	45	No hit	No description
SMART	SM00336	1.8E-7	4	47	IPR000315	B-box-type zinc finger
Pfam	PF00643	3.1E-6	4	42	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	8.674	51	97	IPR000315	B-box-type zinc finger
SMART	SM00336	4.1E-9	51	96	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.3E-6	52	85	IPR000315	B-box-type zinc finger
CDD	cd00021	8.06E-7	54	93	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MRILCDSCES AAATLFCAAD EAALCAICDT KVHMCNKLAS RHVRVGLANP SEVPRCDICE 60 NAPAFFYCEI DGSSLCLQCD VIVHVGGKRM HKRYLRLRQT VEFPGDKLEN DVKDLNAKPM 120 EQVEKVRSQN EERGEIEKHE ELRVSVVKKD YSNGDGHSKR PNKVIDLNM

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269\|PubMed:18540109}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	2e-61	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	2e-61	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004134879.1	1e-113	PREDICTED: B-box zinc finger protein 18 isoform X1
Swissprot	C0SVM5	3e-62	BBX19_ARATH; B-box zinc finger protein 19
TrEMBL	A0A0A0KJB1	1e-111	A0A0A0KJB1_CUCSA; Uncharacterized protein
STRING	XP_004158880.1	1e-112	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24698	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38960.1	1e-64	DBB family protein