PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla014348
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 215aa    MW: 22987 Da    PI: 4.5982
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla014348genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.6e-05103124223
                EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                kC  Cgk+F ++     H+r+H
  Cla014348 103 KCATCGKTFGSWKAVFGHLRSH 124
                7*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.891102129IPR007087Zinc finger, C2H2
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MESAHNKSSP ENSPSGGAGS GGDRADAPLD RTLTNTLEEV IVSSSFSMAP ATTVDITLAL  60
SPQETYGRKR GRAEEHGGGS SSGGGQKGKK KGELIDPPST DPKCATCGKT FGSWKAVFGH  120
LRSHPERDYR GAFPPPKVWE EMLRQETERR QHGQDEGSSR MEVGGNVEGA AGISLPSGRG  180
FEIDLNDPEE QEANKDGFPF DLNMPAPEND EDDDK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16672GRKRGRA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008441135.15e-80PREDICTED: zinc finger protein ZAT4
TrEMBLA0A1S3B2981e-78A0A1S3B298_CUCME; zinc finger protein ZAT4
STRINGXP_008441135.12e-79(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102022128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35610.16e-15C2H2 family protein