PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla014353

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

Nin-like

Protein Properties

Length: 202aa MW: 23221.8 Da PI: 10.2952

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla014353	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82.6	3.8e-26	79	128	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + i+l+dl+k+F pi++A+++L+v+lTvLKr+CR++GI+RWPhRkiks+ Cla014353 79 AGITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSI 128 679*********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.882	63	148	IPR003035	RWP-RK domain
Pfam	PF02042	1.9E-21	81	128	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MKNAHLSCFS KGELCELKNG KFHQPKNLPL LDQDLNFLPC CSVAISKGSE NQMKESCEPG 60 GKLPVIAEKK RRATSEHIAG ITLSDLAKNF GVPITEASRN LNVGLTVLKR KCREFGIHRW 120 PHRKIKSIDG LIRDLQEEAK HREEDHKALM AVTKRQMMLQ NERESIERTP FRELEIETKR 180 FRQDVFRRKH KARALESQSP SV

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	1e-101	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	1e-101	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016899254.1	1e-128	PREDICTED: protein RKD5
TrEMBL	A0A1S4DTD9	1e-127	A0A1S4DTD9_CUCME; protein RKD5
STRING	XP_008440912.1	1e-129	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9646	30	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	2e-46	RWP-RK domain-containing protein