PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla014367

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

G2-like

Protein Properties

Length: 195aa MW: 21125.9 Da PI: 7.9395

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla014367	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.4	3.3e-33	42	96	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl Cla014367 42 KPRLRWTADLHERFVDAVTQLGGAGKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 96 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.8E-32	39	97	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-23	42	97	IPR006447	Myb domain, plants
SuperFamily	SSF46689	4.12E-17	42	98	IPR009057	Homeodomain-like
Pfam	PF00249	1.3E-7	44	95	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MFPRLVNPDG DIQIHGPRGS VASDLTHSHR GDPCLVLTSD PKPRLRWTAD LHERFVDAVT 60 QLGGAGKATP KAIMRTMNVK GLTLFHLKSH LQKYRLGKQS GKDMGEASKD VNGTEEVQAN 120 LPCQRADCST ESCLTSNESP GGLAMEKSPV ASKKNMVNLD SATASLIWGE AKERIQDANI 180 IQVNHHGVSG CDMWG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-20	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-20	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-20	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-20	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	1e-115	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	1e-115	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011658094.1	1e-75	PREDICTED: protein PHR1-LIKE 1-like isoform X1
TrEMBL	A0A0A0KL09	3e-74	A0A0A0KL09_CUCSA; Uncharacterized protein
TrEMBL	A0A1S4DTK9	3e-74	A0A1S4DTK9_CUCME; LOW QUALITY PROTEIN: myb family transcription factor APL-like
STRING	XP_008440945.1	5e-75	(Cucumis melo)
STRING	XP_004134996.1	8e-73	(Cucumis sativus)
STRING	XP_004163406.1	7e-73	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6618	33	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	4e-43	G2-like family protein