PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla014501

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

bZIP

Protein Properties

Length: 362aa MW: 41267.9 Da PI: 7.6306

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla014501	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.3	5.1e-11	77	118	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 +k +rr+++NReAAr+sR+RKka+i++Le+ +L + ++L Cla014501 77 DKIQRRLAQNREAARKSRLRKKAYIKQLETSRVKLIQLEQEL 118 799*************************98555555444445 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.2E-8	72	122	No hit	No description
SMART	SM00338	7.1E-6	74	136	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.714	76	120	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.0E-8	77	115	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.64E-7	79	120	No hit	No description
PROSITE pattern	PS00036	0	81	96	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.1E-28	164	239	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MNSSSTKFYN PGRMGLYEPL HHIGMWGETF RTSANLDAQS SFIIEADTKL ETQSDDASLG 60 SLGDPHVYDQ DDTKRIDKIQ RRLAQNREAA RKSRLRKKAY IKQLETSRVK LIQLEQELEK 120 ARQQGLLAGS RFDNNQLGLS GTTNSGISAF ESEYEQWVEE QNRQICDLRT AVHADITDIE 180 LRILVENAMR HYFKFFRMKA KAAKADVSYI MSGMWKTSAE RLFLWIGGFR PSELLKVLIP 240 QLETLTEQQI SETGSLRKSC LQAEDALRQG MEKLQQNLFE SVVAGQLGEG SHPLQMTAAM 300 ERLEALISFV NQADHLRQET LQQMYKILST RQSAQGLLIL GEFFQRLRAL SSLWANRPCE 360 PA

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MNSSSTKFYN PGRMGLYEPL HHIGMWGETF RTSANLDAQS SFIIEADTKL ETQSDDASLG  60
SLGDPHVYDQ DDTKRIDKIQ RRLAQNREAA RKSRLRKKAY IKQLETSRVK LIQLEQELEK  120
ARQQGLLAGS RFDNNQLGLS GTTNSGISAF ESEYEQWVEE QNRQICDLRT AVHADITDIE  180
LRILVENAMR HYFKFFRMKA KAAKADVSYI MSGMWKTSAE RLFLWIGGFR PSELLKVLIP  240
QLETLTEQQI SETGSLRKSC LQAEDALRQG MEKLQQNLFE SVVAGQLGEG SHPLQMTAAM  300
ERLEALISFV NQADHLRQET LQQMYKILST RQSAQGLLIL GEFFQRLRAL SSLWANRPCE  360
PA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00586	DAP	Transfer from AT5G65210	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681874	1e-126	LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBank	LN713261	1e-126	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004149145.1	0.0	PREDICTED: transcription factor TGA1 isoform X1
Swissprot	Q39237	1e-175	TGA1_ARATH; Transcription factor TGA1
TrEMBL	A0A0A0KUL2	0.0	A0A0A0KUL2_CUCSA; Uncharacterized protein
STRING	XP_004149145.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1096	34	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-168	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]