PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla014535

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

C2H2

Protein Properties

Length: 401aa MW: 42563.3 Da PI: 9.1205

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla014535	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.6	1.1e-05	61	83	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Cla014535 61 FVCEICNKGFQRDQNLQLHRRGH 83 89*******************88 PP
2	zf-C2H2	11.8	0.00073	137	159	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + ks+ k H + + Cla014535 137 WKCEKCSKKYAVKSDWKAHSKIC 159 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.3E-5	60	83	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.17E-6	60	83	No hit	No description
SMART	SM00355	0.017	61	83	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	6.1E-5	61	83	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.949	61	83	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	63	83	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	3.1E-4	125	158	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.17E-6	132	157	No hit	No description
SMART	SM00355	120	137	157	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MPTDLENSSN ASGEVSISST GNQPPPPKSA VKKKRNLPGM PDPDAEVIAL SPKTLLATNR 60 FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRTSKEVKKK VYVCPEPSCV HHHPSRALGD 120 LTGIKKHFCR KHGEKKWKCE KCSKKYAVKS DWKAHSKICG TREYKCDCET VFSRRDSFIT 180 HRAFCDALTK EVAGSLSPAA AENPNLESDP HVKPSGSSSP PPSAPPLSAA TGAAPIAPPP 240 STDAMSSIAS IENKASPENP PPQLGEEPGR TTLTGNSGSS NASVLASLFA SSAASLSLQP 300 PQPPAFCDLL RAMARPDRAA EIAPPLVFEP LSLCLSTDTE SSLFRAGIQE CRPYVPPTPP 360 SMSATGLLQK AAQMGAAAAG ASVFRGLGLS SSSSSAQQGS L

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MPTDLENSSN ASGEVSISST GNQPPPPKSA VKKKRNLPGM PDPDAEVIAL SPKTLLATNR  60
FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRTSKEVKKK VYVCPEPSCV HHHPSRALGD  120
LTGIKKHFCR KHGEKKWKCE KCSKKYAVKS DWKAHSKICG TREYKCDCET VFSRRDSFIT  180
HRAFCDALTK EVAGSLSPAA AENPNLESDP HVKPSGSSSP PPSAPPLSAA TGAAPIAPPP  240
STDAMSSIAS IENKASPENP PPQLGEEPGR TTLTGNSGSS NASVLASLFA SSAASLSLQP  300
PQPPAFCDLL RAMARPDRAA EIAPPLVFEP LSLCLSTDTE SSLFRAGIQE CRPYVPPTPP  360
SMSATGLLQK AAQMGAAAAG ASVFRGLGLS SSSSSAQQGS L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-33	133	193	3	63	Zinc finger protein JACKDAW
5b3h_F	3e-33	133	193	3	63	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681874	0.0	LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBank	LN713261	0.0	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008453721.1	0.0	PREDICTED: protein indeterminate-domain 1-like
Swissprot	Q9LVQ7	1e-147	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A1S3BXQ7	0.0	A0A1S3BXQ7_CUCME; protein indeterminate-domain 1-like
STRING	XP_008453721.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2218	32	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-117	C2H2-like zinc finger protein

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]