PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla014541
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family HD-ZIP
Protein Properties Length: 150aa    MW: 17311.6 Da    PI: 9.7683
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla014541genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox634.3e-2056110357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                k++++t+ q++ Le+ F +++++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  Cla014541  56 KKRKLTAAQVHLLESNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 110
                45689************************************************95 PP
2HD-ZIP_I/II116.51.5e-3756138284
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                  kkr+l++ qv+lLE++F +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y+ Lk+ +++++ e++rLe+ev
    Cla014541  56 KKRKLTAAQVHLLESNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKLHESVVVEKCRLETEV 138
                  9*******************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.58451111IPR001356Homeobox domain
SMARTSM003891.3E-1854115IPR001356Homeobox domain
PfamPF000462.1E-1756110IPR001356Homeobox domain
CDDcd000865.71E-1556112No hitNo description
SuperFamilySSF466891.21E-1856119IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-2158118IPR009057Homeodomain-like
PRINTSPR000318.1E-68291IPR000047Helix-turn-helix motif
PROSITE patternPS00027086109IPR017970Homeobox, conserved site
PRINTSPR000318.1E-691107IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MNHQEAEEHE AVQISQLYTE LYIQMVPQQG NLGESKPRRR RKKNRGSEAE AAAGGKKRKL  60
TAAQVHLLES NFGSEHKLES ERKDRLASEL GLDPRQVAVW FQNRRARWKN KKLEEEYSNL  120
KKLHESVVVE KCRLETEVCF PLSSLLGSQT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14058RKKNRGSEAEAAAGGKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818741e-134LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132611e-134LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008453727.15e-78PREDICTED: homeobox-leucine zipper protein ATHB-40
SwissprotQ9ZU702e-53ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLA0A1S3BY521e-76A0A1S3BY52_CUCME; homeobox-leucine zipper protein ATHB-40
STRINGXP_008453727.12e-77(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47893257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18550.11e-52homeobox protein 21
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]