PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla014583
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ZF-HD
Protein Properties Length: 229aa    MW: 25335.4 Da    PI: 8.4893
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla014583genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.84.6e-324499359
  ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
                  vrY++ClkNhA+++Ggh++DGCgEfmps ge+gt++++kCaAC+CHR+FHRr  ee
    Cla014583 44 PVRYRQCLKNHAVKTGGHVLDGCGEFMPS-GEDGTPDSFKCAACECHRSFHRRVLEE 99
                 589*************************9.999********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.5E-294596IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-184598IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.4E-284695IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.8544796IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.17E-13152222IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-24153224IPR009057Homeodomain-like
TIGRFAMsTIGR015657.5E-24165221IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MELKNQQQTT SSSDHHLPFQ YSLTATTDHL PLNPDPAAAS PSSPVRYRQC LKNHAVKTGG  60
HVLDGCGEFM PSGEDGTPDS FKCAACECHR SFHRRVLEEE DMTNARLNLP TYAPPPYNSH  120
LNGGKNNNQY PMWSCVAPVM MTLGGSVEAP AESSSDGAEA SGKPKKRFRT KFSGGQKVKM  180
MELANKLGWK IQKDDEQQVH KFCNQIGIKT LNFKVWMHNN KPTNNNSSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A6e-161662211873ZF-HD homeobox family protein
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818733e-82LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
GenBankLN7132613e-82LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004146554.21e-117PREDICTED: zinc-finger homeodomain protein 6-like
TrEMBLA0A0A0KWP21e-116A0A0A0KWP2_CUCSA; Uncharacterized protein
STRINGXP_004168867.11e-118(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2470633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.17e-48homeobox protein 24