PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla014665

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

WRKY

Protein Properties

Length: 188aa MW: 20902.7 Da PI: 8.1409

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla014665	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.3	2.8e-32	109	167	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk s++prsYYrCt+++C+vkk+++r a+dp++v++tYeg Hnh+ Cla014665 109 LDDGYRWRKYGQKAVKHSNHPRSYYRCTHHTCNVKKQIQRHAKDPTIVVTTYEGIHNHP 167 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.0E-33	96	168	IPR003657	WRKY domain
SuperFamily	SSF118290	3.4E-28	102	168	IPR003657	WRKY domain
PROSITE profile	PS50811	28.862	104	169	IPR003657	WRKY domain
SMART	SM00774	7.0E-37	109	168	IPR003657	WRKY domain
Pfam	PF03106	4.0E-25	110	167	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MDGDIMNPQG HLMGTSSLIN NCEIDWDGLF SGSSCLSNIE MEKGICGSED QVIASMGDYD 60 NVVNIGGIKE GDIGGGKNNC NKGKMVMGKR RSAMAPRIAF QTRSAEDVLD DGYRWRKYGQ 120 KAVKHSNHPR SYYRCTHHTC NVKKQIQRHA KDPTIVVTTY EGIHNHPSEK LMETLSPLLK 180 QLQFLSGI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	5e-25	100	166	8	74	Probable WRKY transcription factor 4
2lex_A	5e-25	100	166	8	74	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681873	1e-53	LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
GenBank	LN713261	1e-53	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008452004.1	2e-92	PREDICTED: probable WRKY transcription factor 43
Swissprot	Q8VWQ4	1e-56	WRK56_ARATH; Probable WRKY transcription factor 56
TrEMBL	A0A1S3BSW1	5e-91	A0A1S3BSW1_CUCME; probable WRKY transcription factor 43
STRING	XP_008452004.1	8e-92	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3227	34	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41570.1	9e-58	WRKY DNA-binding protein 24