PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla014682
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family NF-YB
Protein Properties Length: 159aa    MW: 17290.2 Da    PI: 4.8932
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla014682genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB170.52e-5344140197
      NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                v+eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++ alatlGf+dy+epl+ yl +yr++ege+
  Cla014682  44 VKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGER 140
                58*********************************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.2E-5043150IPR009072Histone-fold
SuperFamilySSF471138.69E-3947156IPR009072Histone-fold
PfamPF008081.4E-2750114IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.1E-177896No hitNo description
PROSITE patternPS0068508197IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.1E-1797115No hitNo description
PRINTSPR006151.1E-17116134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MDENTGMSER LVEFKYDFSG GGGGVGGSTG GSSEEAGNGV GGVVKEQDRL LPIANVGRIM  60
KQILPPNAKI SKEAKETMQE CVSEFISFVT GEASDKCHKE KRKTVNGDDI CCALATLGFD  120
DYAEPLRRYL VRYRDMEGER AQQNKGCCNN NTNNNNHDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B7e-4444135192Transcription factor HapC (Eurofung)
4g92_B7e-4444135192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818030.0LN681803.1 Cucumis melo genomic scaffold, anchoredscaffold00026.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023549145.14e-90nuclear transcription factor Y subunit B-1-like
SwissprotO822484e-57NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A1S3BT194e-88A0A1S3BT19_CUCME; nuclear transcription factor Y subunit B-1
STRINGXP_008451614.17e-89(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.16e-59nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]