PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla014683
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 266aa    MW: 30047.2 Da    PI: 10.3708
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla014683genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.36.4e-061840123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C++C+k F r  nL+ H r H
  Cla014683 18 FVCEICNKGFQRDQNLQLHRRGH 40
               89*******************88 PP
2zf-C2H220.61.2e-0694116123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC++C+k +  +s+Lk H++t+
  Cla014683  94 WKCEKCSKKYAVQSDLKAHQKTC 116
                58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.9E-61740IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.04E-81740No hitNo description
PfamPF121713.6E-51840IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0171840IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9491840IPR007087Zinc finger, C2H2
PROSITE patternPS0002802040IPR007087Zinc finger, C2H2
SMARTSM003551105989IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-682115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.04E-889115No hitNo description
PROSITE profilePS501579.26594122IPR007087Zinc finger, C2H2
SMARTSM003553994114IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
NAEVIALSPT TLMARNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLRQRT GTEVKKRVYV  60
CPELTCVHHN PARALGDLTG IKKHFSRKHG EKKWKCEKCS KKYAVQSDLK AHQKTCGTRE  120
YKCDCGTLFS RRDSFITHRA FCNALTEENN KLKQGILNNN NNNNDNIEPT SIISTPKLPP  180
FGTSIIPEFN PYDQKNPFKS LPQELSNSAP ATGAPGGLFM VGPRSSNNSS SFSNLKLSST  240
TSSRFSCLYD SKNGCLQVRA KQRRKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-3690161372Zinc finger protein JACKDAW
5b3h_F5e-3690161372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818031e-174LN681803.1 Cucumis melo genomic scaffold, anchoredscaffold00026.
GenBankLN7132551e-174LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004136179.11e-151PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9SCQ62e-95IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A1S3BT631e-147A0A1S3BT63_CUCME; protein indeterminate-domain 2-like
STRINGXP_004136179.11e-150(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.13e-85indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]