PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla014795
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 508aa    MW: 55288.6 Da    PI: 8.5039
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla014795genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-0578100123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++C+k F r  nL+ H r H
  Cla014795  78 FVCEICNKGFQRDQNLQLHRRGH 100
                89*******************88 PP
2zf-C2H213.10.00028154176123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC +C+k++  +s+ k H +t+
  Cla014795 154 WKCDKCSKVYAVQSDWKAHSKTC 176
                58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-577100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.31E-677100No hitNo description
PfamPF121718.1E-578100IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.01778100IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94978100IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
SMARTSM00355280119149IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.1E-4142175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.31E-6149174No hitNo description
SMARTSM00355130154174IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MFASTMSNST SLSEEASVSS TTRVHPEFTC LNPLLPSFSD VHHPPQKLKK KRSLPGNPDP  60
DAEVIALSPK TLLATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLKQRN SKEVKKKAYV  120
CPEPSCVHHH PSRALGDLTG IKKHYCRKHG EKKWKCDKCS KVYAVQSDWK AHSKTCGTRE  180
YRCDCGTLFS RKDSFITHRA FCDALAEESA RLSANQLAMA AAAAAASGAT DININSSSTT  240
AADQSLFPYG NHHQFSNSTL SLPPPPPLSQ THMSLNPWDH PQNPNPNHTL QIIKPEDSNS  300
HSSHSHNFHQ IPNLPLSNSS SANNPFGLIQ DHHHQKVGSS SSSSMITSPF RNLHVSVHPG  360
SNVATSAHLS ATALLQKAAT VGVGAAKSGH HQPESVGHMT HFNMQNIPEF GPPNHIESLS  420
QLDPDYATWQ KTDRLTRDFL GLTGDGNSGV GSGGGSGGSG VVQVSMSVKD MLTYASGLEM  480
FKPHNNNNSS NNNFGYAEPA ANETWGDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-36150214367Zinc finger protein JACKDAW
5b3h_F4e-36150214367Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011659290.10.0PREDICTED: protein indeterminate-domain 9
TrEMBLA0A0A0K7A50.0A0A0A0K7A5_CUCSA; Uncharacterized protein
STRINGXP_004146996.10.0(Cucumis sativus)
STRINGXP_004171470.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-107C2H2 family protein