PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla014806
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 313aa    MW: 32611.8 Da    PI: 6.4033
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla014806genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.28.2e-10162206554
                HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  Cla014806 162 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 206
                99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-15155216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.12157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-15159216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-7162206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-11163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MANNHSDTPA DDFLEQILGI SPFGSSDQGL AGTDGGLAGA AAAAAAAAAQ GQAPMMLQLS  60
SGDGGGHIAT IGSGSVGGAG FHGGPPFPLG LSLDQGKSGF LKAEEASGSG KRYCGDVVDV  120
RASSVKNVFQ GQQMHATMGA APHPPAMRPR VRARRGQATD PHSIAERLRR ERIAERIRAL  180
QELVPSVNKT DRAAMLDEIV DYVKFLRLQV KVLSMSRLGG AGAVAPLVTD IPLSSVEEEG  240
SEGGRNQPAW EKWSNDGTER QVAKLMEENV GAAMQFLQSK ALCIMPISLA SAIYHTQPPD  300
SSSVVKPESN PPP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166171RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818031e-149LN681803.1 Cucumis melo genomic scaffold, anchoredscaffold00026.
GenBankLN7132551e-149LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022991272.10.0transcription factor UNE12
SwissprotO227681e-129UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A1S3BR510.0A0A1S3BR51_CUCME; transcription factor UNE12
STRINGXP_008451266.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54493253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-96bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]