PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla014832
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 230aa    MW: 26255.4 Da    PI: 4.7986
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla014832genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.1e-1899149255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 y+GVr+++ +g+++AeIrd +    +  r++lg+f +ae Aa a+++a+ +++g
  Cla014832  99 VYRGVRRRP-WGKYAAEIRDSTR---QgVRVWLGTFNSAEAAALAYDQAAFCMRG 149
                69*******.**********322...24*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.6E-3098158IPR001471AP2/ERF domain
SMARTSM003802.5E-3699163IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-2299159IPR016177DNA-binding domain
PROSITE profilePS5103222.53799157IPR001471AP2/ERF domain
PfamPF008471.9E-1399149IPR001471AP2/ERF domain
CDDcd000185.97E-19100158No hitNo description
PRINTSPR003676.1E-10100111IPR001471AP2/ERF domain
PRINTSPR003676.1E-10123139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MSIVNDLFGN YQEDFLWNNN QDESLISGEE NYFNYLKEVL FDDIFEEAAG GTTSSDSSSS  60
SSSSSCSSPV MQVKEEIEEG SFGDDNVVQE DESRKEDRVY RGVRRRPWGK YAAEIRDSTR  120
QGVRVWLGTF NSAEAAALAY DQAAFCMRGG LATLNFPVEV VRESLREMKY RWEAGCSPVL  180
ALKRRHSIRR KKMAEVEKME KKMKKKKKQT VVVFEDLGVE YLEELLSLTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-261001591574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189207RKKMAEVEKMEKKMKKKKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004148976.12e-90PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y94e-58ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A0A0K4U45e-89A0A0A0K4U4_CUCSA; Uncharacterized protein
STRINGXP_004166883.17e-90(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31133199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-46ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]