PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla014834
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB_related
Protein Properties Length: 60aa    MW: 6899.98 Da    PI: 8.2231
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla014834genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.3e-081445132
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                     +g+W+ eEd++l++ +++ G  +W++ +++  
        Cla014834 14 KGPWSFEEDQILIKFIQLNGHSNWRALPKKAD 45
                     79************************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.87E-8843IPR009057Homeodomain-like
PROSITE profilePS500906.911947IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.7E-111246IPR009057Homeodomain-like
PfamPF002498.3E-71444IPR001005SANT/Myb domain
CDDcd001675.74E-51643No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 60 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGPWSFE EDQILIKFIQ LNGHSNWRAL PKKADGQPLQ QDYLEEPTMK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818034e-63LN681803.1 Cucumis melo genomic scaffold, anchoredscaffold00026.
GenBankLN7132554e-63LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004148973.11e-24PREDICTED: myb-related protein Myb4
RefseqXP_008451250.11e-24PREDICTED: myb-related protein Myb4-like
SwissprotQ9SJX86e-20MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A0A0KAA12e-23A0A0A0KAA1_CUCSA; Uncharacterized protein
TrEMBLA0A1S3BR102e-23A0A1S3BR10_CUCME; myb-related protein Myb4-like
STRINGXP_008451250.14e-24(Cucumis melo)
STRINGXP_004167773.14e-24(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.13e-22myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]