PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla014874
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GRAS
Protein Properties Length: 460aa    MW: 51356.5 Da    PI: 6.1082
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla014874genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS321.31.9e-98944511374
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                l++lL+ec  a+s ++l +a+++L +l ++asp+g ++ +R+++yf+ A+a+r+ +s  ++++ l          ++  ++++lf+++sP++kf+hl+ N
  Cla014874  94 LISLLFECGVAISVDNLVEAHRMLLELTQMASPYGqSSAERVVTYFAAAMASRVINSILGICSPLLNY-------KSINNSFQLFYNISPFIKFAHLASN 186
                5799*******************************889******************777777655333.......33456899***************** PP

       GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                q+Ile++ +++ +HiiD+di+qGlQWp+LlqaLa R   + +p++RiT+vg       e l  tg+rL+++A++lg++fe+n+ +a ++ +++ ++L+++
  Cla014874 187 QTILESLTQCDLIHIIDLDIMQGLQWPPLLQALAMRMdnNRSPHVRITAVGT----TMELLLDTGKRLSDIARQLGLSFEYNP-IAAKVGKIDASMLKLR 281
                ************************************987889**********....99*************************.7999************ PP

       GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297
                + E+++Vn+v   h l+d  ++      +++ l+++l Pkv+++veq++ + ++ Fl+rf+++l+yysa+fdsl a l +++++r+ vE+ +l rei n+
  Cla014874 282 RSETVVVNWVR--HCLYDGIGADW----KTIGLIQQLGPKVFTFVEQDMCY-GGAFLDRFVSSLHYYSAIFDSLGACLRSDDSNRNQVEHNILYREINNI 374
                **********9..66765555555....5********************99.678********************************************* PP

       GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve.eesgslvlgWkdrpLvsvSaWr 374
                +a  g++r   +e++++Wr+ l+++ + +vp+s + ++qa l+l++++ ++g+++   e gsl l Wkd +L+++S+W+
  Cla014874 375 LAIGGSSR-SGEEKFREWRNELRKC-LMEVPMSANSMAQAWLMLNMHStNHGFSLVqGEGGSLKLRWKDTSLYTASSWT 451
                ******95.56788*********99.678***********************998725567777**************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.68268429IPR005202Transcription factor GRAS
PfamPF035146.6E-9694451IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MKLGRPEVIN GCLLQPPHPH EPWDYEFPSS SASTTPVLHN QAFNLQCNEL AYSVDHVNHL  60
QESSADDQTV NGDEVQVYVG NGRSKDVDDH GLTLISLLFE CGVAISVDNL VEAHRMLLEL  120
TQMASPYGQS SAERVVTYFA AAMASRVINS ILGICSPLLN YKSINNSFQL FYNISPFIKF  180
AHLASNQTIL ESLTQCDLIH IIDLDIMQGL QWPPLLQALA MRMDNNRSPH VRITAVGTTM  240
ELLLDTGKRL SDIARQLGLS FEYNPIAAKV GKIDASMLKL RRSETVVVNW VRHCLYDGIG  300
ADWKTIGLIQ QLGPKVFTFV EQDMCYGGAF LDRFVSSLHY YSAIFDSLGA CLRSDDSNRN  360
QVEHNILYRE INNILAIGGS SRSGEEKFRE WRNELRKCLM EVPMSANSMA QAWLMLNMHS  420
TNHGFSLVQG EGGSLKLRWK DTSLYTASSW TCSNGVVALN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-120834518379Protein SCARECROW
5b3h_A1e-120834517378Protein SCARECROW
5b3h_D1e-120834517378Protein SCARECROW
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818000.0LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004150366.10.0PREDICTED: protein SCARECROW-like
TrEMBLA0A0A0K8I40.0A0A0A0K8I4_CUCSA; Uncharacterized protein
STRINGXP_004150366.10.0(Cucumis sativus)
STRINGXP_004164204.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117873138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-119GRAS family protein