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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Cla014874 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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| Family | GRAS | ||||||||
| Protein Properties | Length: 460aa MW: 51356.5 Da PI: 6.1082 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 321.3 | 1.9e-98 | 94 | 451 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99
l++lL+ec a+s ++l +a+++L +l ++asp+g ++ +R+++yf+ A+a+r+ +s ++++ l ++ ++++lf+++sP++kf+hl+ N
Cla014874 94 LISLLFECGVAISVDNLVEAHRMLLELTQMASPYGqSSAERVVTYFAAAMASRVINSILGICSPLLNY-------KSINNSFQLFYNISPFIKFAHLASN 186
5799*******************************889******************777777655333.......33456899***************** PP
GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
q+Ile++ +++ +HiiD+di+qGlQWp+LlqaLa R + +p++RiT+vg e l tg+rL+++A++lg++fe+n+ +a ++ +++ ++L+++
Cla014874 187 QTILESLTQCDLIHIIDLDIMQGLQWPPLLQALAMRMdnNRSPHVRITAVGT----TMELLLDTGKRLSDIARQLGLSFEYNP-IAAKVGKIDASMLKLR 281
************************************987889**********....99*************************.7999************ PP
GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297
+ E+++Vn+v h l+d ++ +++ l+++l Pkv+++veq++ + ++ Fl+rf+++l+yysa+fdsl a l +++++r+ vE+ +l rei n+
Cla014874 282 RSETVVVNWVR--HCLYDGIGADW----KTIGLIQQLGPKVFTFVEQDMCY-GGAFLDRFVSSLHYYSAIFDSLGACLRSDDSNRNQVEHNILYREINNI 374
**********9..66765555555....5********************99.678********************************************* PP
GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve.eesgslvlgWkdrpLvsvSaWr 374
+a g++r +e++++Wr+ l+++ + +vp+s + ++qa l+l++++ ++g+++ e gsl l Wkd +L+++S+W+
Cla014874 375 LAIGGSSR-SGEEKFREWRNELRKC-LMEVPMSANSMAQAWLMLNMHStNHGFSLVqGEGGSLKLRWKDTSLYTASSWT 451
******95.56788*********99.678***********************998725567777**************6 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 46.682 | 68 | 429 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 6.6E-96 | 94 | 451 | IPR005202 | Transcription factor GRAS |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 460 aa Download sequence Send to blast |
MKLGRPEVIN GCLLQPPHPH EPWDYEFPSS SASTTPVLHN QAFNLQCNEL AYSVDHVNHL 60 QESSADDQTV NGDEVQVYVG NGRSKDVDDH GLTLISLLFE CGVAISVDNL VEAHRMLLEL 120 TQMASPYGQS SAERVVTYFA AAMASRVINS ILGICSPLLN YKSINNSFQL FYNISPFIKF 180 AHLASNQTIL ESLTQCDLIH IIDLDIMQGL QWPPLLQALA MRMDNNRSPH VRITAVGTTM 240 ELLLDTGKRL SDIARQLGLS FEYNPIAAKV GKIDASMLKL RRSETVVVNW VRHCLYDGIG 300 ADWKTIGLIQ QLGPKVFTFV EQDMCYGGAF LDRFVSSLHY YSAIFDSLGA CLRSDDSNRN 360 QVEHNILYRE INNILAIGGS SRSGEEKFRE WRNELRKCLM EVPMSANSMA QAWLMLNMHS 420 TNHGFSLVQG EGGSLKLRWK DTSLYTASSW TCSNGVVALN |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5b3g_A | 1e-120 | 83 | 451 | 8 | 379 | Protein SCARECROW |
| 5b3h_A | 1e-120 | 83 | 451 | 7 | 378 | Protein SCARECROW |
| 5b3h_D | 1e-120 | 83 | 451 | 7 | 378 | Protein SCARECROW |
| Search in ModeBase | ||||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | LN681800 | 0.0 | LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017. | |||
| GenBank | LN713255 | 0.0 | LN713255.1 Cucumis melo genomic chromosome, chr_1. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_004150366.1 | 0.0 | PREDICTED: protein SCARECROW-like | ||||
| TrEMBL | A0A0A0K8I4 | 0.0 | A0A0A0K8I4_CUCSA; Uncharacterized protein | ||||
| STRING | XP_004150366.1 | 0.0 | (Cucumis sativus) | ||||
| STRING | XP_004164204.1 | 0.0 | (Cucumis sativus) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF11787 | 31 | 38 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G54220.1 | 1e-119 | GRAS family protein | ||||




