PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla014910

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

NAC

Protein Properties

Length: 201aa MW: 23304.3 Da PI: 8.2146

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla014910	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	97.4	2.1e-30	8	84	53	128
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + kewyfFs rd+ky +g+r+nrat +gyWkatgkd+ v++ +ge++g++ktLvfy++rap+g kt W+mhe+r+ Cla014910 8 LNGKEWYFFSFRDRKYGRGERANRATIEGYWKATGKDRMVMNPkSGEVMGMRKTLVFYRNRAPNGIKTAWIMHEFRI 84 4679***********************************9878889*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	39.528	1	103	IPR003441	NAC domain
SuperFamily	SSF101941	8.11E-37	5	103	IPR003441	NAC domain
Pfam	PF02365	3.7E-14	12	84	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MNAEVAKLNG KEWYFFSFRD RKYGRGERAN RATIEGYWKA TGKDRMVMNP KSGEVMGMRK 60 TLVFYRNRAP NGIKTAWIMH EFRIQNPHFP SKEDWVLCRV FHKSKRDEIT PETTHMDPGF 120 DMAAPASAPS SLCSPWSYVQ FPPAAEANMV PWNNINNNVE EVAGGFRSNG VDHDYSTIQR 180 MKFEIEDSIQ NDFIPFEYFI A

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-27	6	103	66	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-27	6	103	66	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-27	6	103	66	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-27	6	103	66	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-27	6	103	69	168	NAC domain-containing protein 19
3swm_B	2e-27	6	103	69	168	NAC domain-containing protein 19
3swm_C	2e-27	6	103	69	168	NAC domain-containing protein 19
3swm_D	2e-27	6	103	69	168	NAC domain-containing protein 19
3swp_A	2e-27	6	103	69	168	NAC domain-containing protein 19
3swp_B	2e-27	6	103	69	168	NAC domain-containing protein 19
3swp_C	2e-27	6	103	69	168	NAC domain-containing protein 19
3swp_D	2e-27	6	103	69	168	NAC domain-containing protein 19
4dul_A	2e-27	6	103	66	165	NAC domain-containing protein 19
4dul_B	2e-27	6	103	66	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269\|PubMed:11114891}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681802	4e-41	LN681802.1 Cucumis melo genomic scaffold, anchoredscaffold00046.
GenBank	LN713255	4e-41	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011659202.1	3e-94	PREDICTED: NAC domain-containing protein 21/22-like
Swissprot	Q84TE6	5e-42	NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBL	A0A0A0K6U0	7e-93	A0A0A0K6U0_CUCSA; Uncharacterized protein
STRING	XP_004154466.1	4e-94	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4381	33	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	7e-55	NAC domain containing protein 74

Publications ? help Back to Top
Le Hénanff G, et al. Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance. J. Exp. Bot., 2013. 64(16): p. 4877-93 [PMID:24043850] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Huo X,Wang C,Teng Y,Liu X Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] Chen X, et al. Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis. Plant Physiol., 2016. 170(4): p. 2136-45 [PMID:26850273] Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]