PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla014916
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 233aa    MW: 26489.1 Da    PI: 10.0836
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla014916genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.31.6e-12113153350
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 
                 +GV++  k+ +W A I++      +k+++lg+fg+ eeAa ++++a+
  Cla014916 113 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTFGSQEEAAHLYDRAA 153
                79**98..47*********4.....5********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.4495167IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-10111157IPR016177DNA-binding domain
SMARTSM003809.9E-5112169IPR001471AP2/ERF domain
PfamPF008476.0E-7113154IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.9E-8114157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MLLASNHDAI LMILSVTATN ISFVAPLPKF SENGTAPENP SPSNKLVTLH PMSSDDVKIT  60
DRSSIVDMES SFANALDWTS PNEQSNQPIS GHPLKHRKRH RRRNSHNQEL SIMRGVYFKN  120
MKWQAAIKVD KKQIHLGTFG SQEEAAHLYD RAAFVCGREP NFELSKEEKQ ELQKFKWEDF  180
LAMTRHAITN KKHKRLSTGS SPKKLGASSL QIDNKQLKQK FNESPVTEDI YFT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818023e-73LN681802.1 Cucumis melo genomic scaffold, anchoredscaffold00046.
GenBankLN7132553e-73LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004149780.11e-137PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_011659197.11e-137PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A0A0K8E31e-135A0A0A0K8E3_CUCSA; Uncharacterized protein
STRINGXP_004149780.11e-136(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54573253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.22e-39ERF family protein