PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla014948
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family Trihelix
Protein Properties Length: 306aa    MW: 35405.7 Da    PI: 5.1629
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla014948genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix60.83.2e-1928117286
   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                Wt+qe+ +Li a++e++ +l+rg+lk  +Weev+  +      +    ++++ qC++k+e+l++r++ +k++ + +t +sss++ yfd + 
  Cla014948  28 WTHQETVHLIHAYQEKWYSLERGQLKSSQWEEVAVTVaarcgySNFDPSKTSAQCRHKMEKLRQRFRSEKHRLSIGT-QSSSRWLYFDLMS 117
                **********************************99975554444444899***********************995.66679*****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.2722790IPR017877Myb-like domain
PfamPF138371.1E-1627118No hitNo description
SMARTSM005956.2E-735124IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MATPHPPPPA SVSSSKSIST EKAQPIPWTH QETVHLIHAY QEKWYSLERG QLKSSQWEEV  60
AVTVAARCGY SNFDPSKTSA QCRHKMEKLR QRFRSEKHRL SIGTQSSSRW LYFDLMSNLL  120
RGPLPISARP ISLIPFDNDE EDQIAEKSDN YNSDYEAEER NNRSKSKSIS NILRRPIVVD  180
GSFSRRRTRN CSEDEEEEEE EEEEEEEEER DIRVSRFPEE YVTGEAAEEE GKEMCSKLAA  240
EIRLFADRLV GMESLKMEMM KEAEMNRIAM ENRRIEMILE SEKKIVNSIA KAFGCPPKRL  300
KIGHDS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818021e-170LN681802.1 Cucumis melo genomic scaffold, anchoredscaffold00046.
GenBankLN7132551e-170LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023004832.11e-168trihelix transcription factor ASIL1
TrEMBLA0A0A0K6R61e-155A0A0A0K6R6_CUCSA; Uncharacterized protein
STRINGXP_004139629.11e-156(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100872835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.12e-28Trihelix family protein