PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla015120

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

C2H2

Protein Properties

Length: 169aa MW: 18011.1 Da PI: 10.3014

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla015120	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.0002	42	64	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C ++F ++ L H++ H Cla015120 42 FRCQFCRRVFANSQALGGHQNAH 64 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.15E-6	38	69	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.1E-4	38	68	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.448	42	69	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	44	64	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MSNQNPSSSI LKIFGFPLVE PDDNPPETPD AVDTKSNDDR KFRCQFCRRV FANSQALGGH 60 QNAHKRERQR AKRALYFHAA APRPPSLCSS VFPANIGGGG GGGGSRILPR NGNGYFAAGA 120 YGRVSASSGR WMFGNSGEGK RENSGCKLGG EKGLCVDLHL KLSPSNSSN

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681803	1e-127	LN681803.1 Cucumis melo genomic scaffold, anchoredscaffold00026.
GenBank	LN713255	1e-127	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008451655.1	5e-93	PREDICTED: zinc finger protein 6-like
TrEMBL	A0A1S3BSU1	1e-91	A0A1S3BSU1_CUCME; zinc finger protein 6-like
STRING	XP_008451655.1	2e-92	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3903	24	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06650.1	2e-14	C2H2 family protein