PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla015235
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 309aa    MW: 34438.9 Da    PI: 8.1119
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla015235genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.33e-06141160120
                EEETTTTEEESSHHHHHHHH CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                ++Cp C+k F+r  nL+ H+
  Cla015235 141 FSCPLCSKAFNRYNNLQMHM 160
                89*****************9 PP
2zf-C2H214.20.00013225247123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C +C+k F  k + ++H +++
  Cla015235 225 FTCRKCTKAFAVKGDWRTHEKNC 247
                89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.46E-6134163No hitNo description
SMARTSM003550.11141163IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.866141168IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-5141160IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280143163IPR007087Zinc finger, C2H2
SuperFamilySSF576676.64E-6208245No hitNo description
Gene3DG3DSA:3.30.160.605.0E-5212245IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035565225245IPR015880Zinc finger, C2H2-like
SMARTSM00355180251274IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MTDPNYSNSF NFIPLPSYLP PSNFPFSQCR HPLPPPPPPP PPSSPPQALP LLNTLSPETA  60
DHPSSSTTTC SFDDESAALA LDFSLSCPSS DLDSSFHSFS PDPGTGKILD GDISDHPLPI  120
SGKGQFWIPT PSQILIGPTQ FSCPLCSKAF NRYNNLQMHM WGHGSQYRKG PESLKGTQPT  180
AMLRLPCYCC AAGCKHNIDN PRSRPLKDFR TLQTHYKRKH GIKPFTCRKC TKAFAVKGDW  240
RTHEKNCGKI WYCFCGSDFK HKRSLKDHIK AFGHGHGALG LDYFDDDNEP SPELQLQHQS  300
QHGLFLHLH
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008461280.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-104ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A1S3CFK30.0A0A1S3CFK3_CUCME; zinc finger protein WIP2-like
STRINGXP_004158240.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-112C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]