PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla015244
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family NF-YA
Protein Properties Length: 341aa    MW: 38343.1 Da    PI: 8.7571
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla015244genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.87.6e-33173229158
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                +ep+YVNaKQy++Il+RRq+Rak+e ekk+ +ksrkpylheSRh hA+rR+RgsgGrF
  Cla015244 173 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-IKSRKPYLHESRHLHAMRRARGSGGRF 229
                69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005217.9E-38171232IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115239.152172232IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.5E-28174229IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.9E-24175197IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860177197IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.9E-24206229IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MQSKPENVDQ QVADRAKYLL QSTKYSEPWW HGVGNNTIAG EKAAKTSSAE YLNVTVTSGA  60
TQSQANDENI GKEVQHVKYI PFTTSPPVGE HLDLNSQMEL VGHSIMLDFL DIASLLTGYK  120
KDFKYLHLQV LTSYPFSDAQ YCQMLASYGP QSTLPHIYGL HHARMPLPLE MEEEPVYVNA  180
KQYHGILRRR QSRAKAELEK KVIKSRKPYL HESRHLHAMR RARGSGGRFL NTKKPNNVIS  240
NTNREEDINS GANHLTKPVS EAGSKYMVTD KNGIKDTLDE EGREFMTQNM QITHAFFNGK  300
SNVHGLSTYN SQLADVEGGH LNQPHESMQV NGAPQRAIPI N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A8e-21173237266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818041e-156LN681804.1 Cucumis melo genomic scaffold, anchoredscaffold00060.
GenBankLN7132551e-156LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008461297.10.0PREDICTED: nuclear transcription factor Y subunit A-9-like
RefseqXP_008461299.10.0PREDICTED: nuclear transcription factor Y subunit A-9-like
TrEMBLA0A1S3CED90.0A0A1S3CED9_CUCME; nuclear transcription factor Y subunit A-9-like
STRINGXP_008461297.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89623144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.15e-33nuclear factor Y, subunit A9